Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi180g00003 ATGGCGGGTTCCTTTGATATGATTAGGGAAGTGTCTCCTGTTAAGGATTGTTGGAGGCTTAGGGTTAGGGTAATTCGATTATGGGAAATGTGTTCAATTCTGGATCCCCTGAAACCTTTTGCAATTGATATGGTATTGATTGATGTTGGGGGTGGTAAAATTCAAGCAACTATTCGAAAACCTATGATGAAGAAGTTCAAGAATGCTATCGTGGAGGGAGAGGTCTACACAATGATGAATTTTGCTGTTATAAGAAGTGCTGGGAACTACCGTGCAGCAAAGCATGAATATAAGCTACTATTTAGTGGAAAAACCAGAGTATTCCCAACTCAGTCTGAATTGATCCCTATGAATGGACTGTCCCTCATGACAACGGATGATGTTACTAAGACCAACGAGGAATCTAACTACCTCATTGATTTGGTAGGTCTTCTCACAGCTGTTTCTGTTGAGAAAGAACTTGTCACAGAAGGCAGGAAGACCAGAATGATTCAAATGGAACTTACAGATTATAAGGGGAAAATTCATTGTACTGTATTTGGCAATTACGTGGATACTATTAAGGATTTGCTCACAAACGGTGTTAGCCCTATGCCTATTTTGGTGGTGCAGTTTTTTAAAGTTAGACTTTATAAGGGTAGTGTTGTCATCCAGAATGTGAACAACGCATCTAGAATTCTCTGTAACGAGGATATTCCAGAGGTCAATGACTTCAGGAATGGGCTTGCTGTTAATGGTATTGATCCTAATGTTGCTATGGGGGAGTTGGTCATTGGAAATCCAGTTGTCCCACTTGCTGATGACTTCCTTAAGTTGTATCCAAGGAAGACTCCTGAGCAATTACAAATGACTGAAGAGGAAGGCACATTCATTGTACTAGCTACTATTATTGCTGTTTTAACTGAAGAACAGTGGCGGTATGGTGCCTGCAAGTGTCACAAGGCAGTTACCCTTGATGGAGGTCTATATTATTGCTCTAATTGTTGCACCCATGTTTGTGAAGTAACACCAAGGTTTAAGTTGAAGGTAGGGGTAGGTCATTGGGATGAAAGTGTTGTATTTGTTCTTTTTGACTCTGACGTTGCTCATCTATTAGGCAAGTCGTGCAAGGAGATTATGGCTGAGACCAAGGATCTCAAGTCTGTCGAACATCCTCCTGACCTGAAGCGATTGATTGGGAGAGCACTTTTGTTTAAGGTTGAAAAAGGGGCAGAGTATGCATTTAGTTACGACGACTCATTCAAGGTCAAGAAAGTGTGTGATGATCCTGATATAATATCTAAGTTCAAGGATAGGTGGGGAATAGTAACTCCTAAAAAGTTGAAGTTTGATCCTCCATTCCCTATTCTGGTTGAGGGTGAAGCTGTCCATGATTTGTGCGATTCCTCATCGGATGATCTTGATGTGTTGGTCGCTAATCCTGTCTTTTTAGTGTCAAATGGTGAGGCTTCTTCAAGCTCAGGCTCTCAGATCCAGAAGGCGAGTCCTATTTTTGCACATCATGAAGAGGAAGACGCTGGGCCTGGTGCTATGAAGAAGATGAAGCTGAACAGTGTCAAGATTGAGAAGGAATGA 1575 0.4152 MAGSFDMIREVSPVKDCWRLRVRVIRLWEMCSILDPLKPFAIDMVLIDVGGGKIQATIRKPMMKKFKNAIVEGEVYTMMNFAVIRSAGNYRAAKHEYKLLFSGKTRVFPTQSELIPMNGLSLMTTDDVTKTNEESNYLIDLVGLLTAVSVEKELVTEGRKTRMIQMELTDYKGKIHCTVFGNYVDTIKDLLTNGVSPMPILVVQFFKVRLYKGSVVIQNVNNASRILCNEDIPEVNDFRNGLAVNGIDPNVAMGELVIGNPVVPLADDFLKLYPRKTPEQLQMTEEEGTFIVLATIIAVLTEEQWRYGACKCHKAVTLDGGLYYCSNCCTHVCEVTPRFKLKVGVGHWDESVVFVLFDSDVAHLLGKSCKEIMAETKDLKSVEHPPDLKRLIGRALLFKVEKGAEYAFSYDDSFKVKKVCDDPDIISKFKDRWGIVTPKKLKFDPPFPILVEGEAVHDLCDSSSDDLDVLVANPVFLVSNGEASSSSGSQIQKASPIFAHHEEEDAGPGAMKKMKLNSVKIEKE 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi180g00003 524 MobiDBLite consensus disorder prediction 497 524 - -
Sebi180g00003 524 CDD RPA1_DBD_C 279 419 IPR047192 -
Sebi180g00003 524 CDD RPA1_DBD_B_like 140 239 - -
Sebi180g00003 524 MobiDBLite consensus disorder prediction 482 524 - -
Sebi180g00003 524 CDD RPA1_DBD_A_like 19 107 - -
Sebi180g00003 524 SUPERFAMILY Nucleic acid-binding proteins 279 401 IPR012340 -
Sebi180g00003 524 SUPERFAMILY Nucleic acid-binding proteins 5 110 IPR012340 -
Sebi180g00003 524 Gene3D - 4 109 IPR012340 -
Sebi180g00003 524 Pfam Replication factor-A C terminal domain 292 384 IPR013955 -
Sebi180g00003 524 PANTHER OS03G0429900 PROTEIN 8 402 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi180g00003 524 Pfam Domain of unknown function DUF223 44 111 IPR003871 -
Sebi180g00003 524 Gene3D - 115 248 IPR012340 -
Sebi180g00003 524 Gene3D - 271 421 IPR012340 -
Sebi180g00003 524 SUPERFAMILY Nucleic acid-binding proteins 121 247 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi180g00003 Sebi-Chr180 25305 28276 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi180g00003 8 392 Core DNA Replication Machinery Family AT4G19130 21.411 1.95e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi180g00003 - - lja:Lj6g3v0884310.1 392.119