Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi180g00002 ATGGATGAGTTCCCTTCTTTTATACATCCCGTGAAAGATATAACCCCTGTAATTGATACTTGGAACCTAAAGGTTAAAGTTCTCCGCATGTGGAGTGCTCCTAATATGTATAATCCCTCAGAGTTTGTTTGTCTTGATATGATTCTAATGGACTCTGAGGGTGCGAGGATTGAGGCATCTCTTCCTAATGCACTCCTCAACGCTTTCCGATTTGAGCTGGTTGAGGACAGATTTTACCGTCTGTTAAATCTTTCTGTTGTTCCAAATGTTGGTCCATACAAGACAACCCCACATAAATATAAGTTGCTATTCATGAAAAAGACTAGAATTGCTTTGGACGTACCATTCCCTACTGGGCCATACTCTTTGGTTCCTGTTTGTGCTGCTGATGTATCCAAAAAATGGGAGCAACTTGATTATATGATAGATTTCGTTGGAGTCTTAACCTCAATATCTTCTGAGAATCAACACATGATCTTTGGGATTATGAAGAGATTTATTTTCCTTGAGATAACTGACCACACAGGAAAGATTCAATGTGTGCTTTATGATGAGTATGTTGATGTAGTTCAAAACTATCTCAAGATTCACGGCATGTCTAGACCTATTTTAGTTATTCAATTTGCCAAGCTGAGTCCAGTGGGAGGTGTTATTTTCGGGGGATCTAATATACAAAATATGTTCAGTGCAACTAGGTTGTTGTTTAATCCTGTTCTTCCGGAAGTGGTTGATTTTAGGAGAAGTGCTGCAATGCTTGGTATTGATCTCGAGGGTAGAATTGGATTCTTGCATAGGATTATGTCATATGTATCAGTCAGGGATGACTTTCTTAACTTGAATCCACCTAAGAAACTTTCTGATCTTCGTAGTTCCCCACAGAGTGGTGTATTTGTTGTATGGGTTAAGATTATAAAGGTTGTGAATGAAGGTAGGTGGTGGTTTTTAGAATGCAAATGCCGAAATCCTGTAGTTCCTAAGGAAGGAATTTATTATTGCTCTGAATGCCGTAGGAATGTTGTGAACGTTATTCCCCGTTACCAGCTTAAGTTTGAAGTCTATGATTCAAATGACTGTATCATTGTTGCTTTGGATGATTCTGATGTAGAGCGTATGTTGAACAAATCATGCAAGTCTATCTTGGATGATATAGAAGATCCATTAGCCAAAACGATCCCTGAACTTTTCCACTCTCTCACTGGGAAGCAAATTCTACTGAAAATCCACAAATTTGCAAGTCTTGATGGTGTAGCTGATGACCTTTTTAAGGTTACTAGAATATGTGAGGACATGGATGTCATTGGTTGTTTTTTAAGGGCTGAACCATTTATAATCCCCCTGCAGATTGAGGGAGCGCGTGAAATCACATTTTTGCCTTTGATTCATGGATTGAACCAAGAAGCACATCATGGCACTTCTAGACTTTGTCCTGGTCCAGCAACCCAAAGTCAAGGCCGAGCCTGTAATACTTCCAAACCATCAAGCTGTGCACCGCATAATGACATTAGAAGCGTTAGTCGTAGGCTTGAGATTGAGTTCCAGAAAGCACGCAAGGCTGGAAAGTGCATTATACTAGATTCAATGGATGAATGA 1590 0.3962 MDEFPSFIHPVKDITPVIDTWNLKVKVLRMWSAPNMYNPSEFVCLDMILMDSEGARIEASLPNALLNAFRFELVEDRFYRLLNLSVVPNVGPYKTTPHKYKLLFMKKTRIALDVPFPTGPYSLVPVCAADVSKKWEQLDYMIDFVGVLTSISSENQHMIFGIMKRFIFLEITDHTGKIQCVLYDEYVDVVQNYLKIHGMSRPILVIQFAKLSPVGGVIFGGSNIQNMFSATRLLFNPVLPEVVDFRRSAAMLGIDLEGRIGFLHRIMSYVSVRDDFLNLNPPKKLSDLRSSPQSGVFVVWVKIIKVVNEGRWWFLECKCRNPVVPKEGIYYCSECRRNVVNVIPRYQLKFEVYDSNDCIIVALDDSDVERMLNKSCKSILDDIEDPLAKTIPELFHSLTGKQILLKIHKFASLDGVADDLFKVTRICEDMDVIGCFLRAEPFIIPLQIEGAREITFLPLIHGLNQEAHHGTSRLCPGPATQSQGRACNTSKPSSCAPHNDIRSVSRRLEIEFQKARKAGKCIILDSMDE 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi180g00002 529 CDD RPA1_DBD_A_like 23 110 - -
Sebi180g00002 529 SUPERFAMILY Nucleic acid-binding proteins 8 118 IPR012340 -
Sebi180g00002 529 SUPERFAMILY Nucleic acid-binding proteins 291 407 IPR012340 -
Sebi180g00002 529 Gene3D - 7 111 IPR012340 -
Sebi180g00002 529 Pfam Domain of unknown function DUF223 47 113 IPR003871 -
Sebi180g00002 529 SUPERFAMILY Nucleic acid-binding proteins 138 249 IPR012340 -
Sebi180g00002 529 CDD RPA1_DBD_B_like 143 248 - -
Sebi180g00002 529 Gene3D - 126 253 IPR012340 -
Sebi180g00002 529 Gene3D - 278 425 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi180g00002 Sebi-Chr180 20109 22753 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi180g00002 8 372 Core DNA Replication Machinery Family AT5G61000 22.051 1.52e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi180g00002 - - lja:Lj1g3v3385890.1 259.225