Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi17g00080 ATGCCATTCCCCTATGCCACCCTCAACCTATTTACCAATGCATCATCTTCTGCCACTGTCCCTGTTGCCACCTTTGGTGGATTTAGTACCACCGCTTCCAAGCTCATGGTCAAAACGACGGGTCGTTTTCCCTTTTCCACAACCAAGAACCGCTCCCGTGCGGCAGTGATCAGAGCCAAAGCGGGAACTGATTACTACTCCACCTTGAATGTTAGCAGCAATGCGACCCTGCAAGAAATCAAGAGCGCCTATCGAAAACTAGCTCGCAAGTACCATCCAGATATGAACAAAAGCCCTGGGGCAGAGGAGAAGTTCAAGGAGATCAGTGCTGCATATGAGGTCCTATCAGATGATGAGAAAAGATCTTTATATGATCGCTTTGGTGAGTCAGGTCTACAAGAAGAAAATGAAGGGTCAGCCAGTGCTTCAGGGGTGGATCCTTTTGATTTATTTGATGCATTTTTTGGTCGTTCGGATGGACTATTTGGAGATGTTGATGAAGGAGGCATCAACTTCAATTTCAGAAAAAATAGAAACCGTGGTCATGATATTCGGTATGACCTTCATTTGAGCTTTGAAGAATCAATTTTTGGAGGACAGAGAGAAATTGAAGTTTCTTGTTTTCAGACATGTAATGATTGTGATGGTTCTGGAGCTAAATCAAGAAATTGCATTAAACAATGCATAAATTGTGGTGGCAGAGGAGGAGAAATGAAAAGTCAGAAAACACCCTTTGGAATGTTGTCTCAGGTTTCTACATGCTCTAAGTGTGGAGGTGTTGGCAAGATAATCACTGATCACTGTCGAAGATGTGATGGCAGTGGTCAAGTGCAAGCTAAACGAACAATGGAAGTGGCCATTCCTCCTGGCATCAATGATGGAGACACAATGCAAATTCGAGGAGAAGGGAATTTTGATAAGAAGAGGCGTTATACTGGGGATCTTTTTGTTGTCCTCCATGTAGATGAAAAGCAAGGAATTTGGAGAGAGGGACTTCATTTATACTCAAAGATTAACATTGACTTCACCGAGGCAATACTGGGGTCTGTTAAAAAGGTAGAAACTGTTGAAGGTTTAAGGGACCTCCAAATTCCTTCCGGGATTCAACCTGGAGATTCAGTGAAATTCTCACGTTTGGGAGTTCCAGACATGAAAAAACCATCTATTCGAGGCGATCATTACTTCATTGTGAATGTTCTTATTCCTAAAAATATCAGTGGCGTCGAACGTGAACTTGTTGAGCAGTTAGCTTCACTAAGGGCATCTAGCAAAGGGATACCTAAAGGAAAATCCAATGAATTCATAAAGAGGGATCCGAAAAACGATGCTTCAAGCAAAGGAATAAAAAATGTTGATTCTTTATGGAGATCAATCAAGAACTTTTTAAGGAGAGGAAAGTCTGAAGAAAGGCATAAGGAGAACATGGTAAATTCTTAA 1437 0.4182 MPFPYATLNLFTNASSSATVPVATFGGFSTTASKLMVKTTGRFPFSTTKNRSRAAVIRAKAGTDYYSTLNVSSNATLQEIKSAYRKLARKYHPDMNKSPGAEEKFKEISAAYEVLSDDEKRSLYDRFGESGLQEENEGSASASGVDPFDLFDAFFGRSDGLFGDVDEGGINFNFRKNRNRGHDIRYDLHLSFEESIFGGQREIEVSCFQTCNDCDGSGAKSRNCIKQCINCGGRGGEMKSQKTPFGMLSQVSTCSKCGGVGKIITDHCRRCDGSGQVQAKRTMEVAIPPGINDGDTMQIRGEGNFDKKRRYTGDLFVVLHVDEKQGIWREGLHLYSKINIDFTEAILGSVKKVETVEGLRDLQIPSGIQPGDSVKFSRLGVPDMKKPSIRGDHYFIVNVLIPKNISGVERELVEQLASLRASSKGIPKGKSNEFIKRDPKNDASSKGIKNVDSLWRSIKNFLRRGKSEERHKENMVNS 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi17g00080 478 FunFam Molecular chaperone Hsp40/DnaJ family protein 327 419 - -
Sebi17g00080 478 CDD DnaJ_zf 211 275 IPR001305 GO:0031072|GO:0051082
Sebi17g00080 478 Pfam DnaJ C terminal domain 184 402 IPR002939 -
Sebi17g00080 478 Pfam DnaJ domain 64 125 IPR001623 -
Sebi17g00080 478 SUPERFAMILY HSP40/DnaJ peptide-binding domain 178 335 IPR008971 GO:0006457|GO:0051082
Sebi17g00080 478 SUPERFAMILY Chaperone J-domain 61 165 IPR036869 -
Sebi17g00080 478 FunFam Molecular chaperone DnaJ 203 280 - -
Sebi17g00080 478 SUPERFAMILY HSP40/DnaJ peptide-binding domain 329 413 IPR008971 GO:0006457|GO:0051082
Sebi17g00080 478 PRINTS DnaJ domain signature 100 120 IPR001623 -
Sebi17g00080 478 PRINTS DnaJ domain signature 66 84 IPR001623 -
Sebi17g00080 478 PRINTS DnaJ domain signature 84 99 IPR001623 -
Sebi17g00080 478 PRINTS DnaJ domain signature 120 139 IPR001623 -
Sebi17g00080 478 Gene3D - 328 420 - -
Sebi17g00080 478 ProSiteProfiles dnaJ domain profile. 64 128 IPR001623 -
Sebi17g00080 478 Pfam DnaJ central domain 211 275 IPR001305 GO:0031072|GO:0051082
Sebi17g00080 478 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 42 421 - -
Sebi17g00080 478 Gene3D DnaJ domain 61 164 IPR036869 -
Sebi17g00080 478 CDD DnaJ_C 183 405 - -
Sebi17g00080 478 MobiDBLite consensus disorder prediction 430 445 - -
Sebi17g00080 478 FunFam Chaperone protein dnaJ A6 chloroplastic 61 167 - -
Sebi17g00080 478 CDD DnaJ 64 117 IPR001623 -
Sebi17g00080 478 Hamap Chaperone protein DnaJ [dnaJ]. 61 461 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Sebi17g00080 478 MobiDBLite consensus disorder prediction 424 447 - -
Sebi17g00080 478 Gene3D - 181 317 - -
Sebi17g00080 478 ProSitePatterns Nt-dnaJ domain signature. 105 124 IPR018253 -
Sebi17g00080 478 Gene3D - 211 275 - -
Sebi17g00080 478 SMART dnaj_3 63 120 IPR001623 -
Sebi17g00080 478 ProSiteProfiles Zinc finger CR-type profile. 198 280 IPR001305 GO:0031072|GO:0051082
Sebi17g00080 478 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 198 278 IPR036410 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi17g00080 Sebi-Chr17 2477406 2488731 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi17g00080 65 125 C2H2 Transcription Factor Family AT1G74250 41.791 1.09e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi17g00080 K03686 - gmx:100782135 754.592