LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi17g00009	ATGGGACAACTAGGGTTAGGGGAAGAGGAAGATGAAGGAGACCAAGGCACTGAGAACTTAGGGCACAAGGAAGTGAGAAACTCTATGAAAGAAAACTTGCAAGAAGAGACAGCCGGAAGAGCAGCGGGGAAGGGACAAGAGAAAGGAGCGTACCCTCTAAAGCCTTTACACGCAAAAATACAACCAGCAACCAGTCACTGCTCCCAGGTTCAATACAAATACAAATACAAAGGAGGCATAATGCCACCAGTTGGTAAAGGCTTGAAAATGGCAGACACAAATTCTGTTGAAGTGATTTTGAACTTTCTGAGGAGAAATCAGTTCACAAGAGCTGAGGCAGCTTTGCGCAGTGAGCTTAGTAACCTTTTTGATGGAAATGGGTTCCTTCAGAAGCCTGCATTGGAAGAAAAGGCCTTGTGTGATATATCGCAGAATGATAAGGGGAAGCCTGTGGTAGAAAAGCAAGGGTTGGATTCTCGTGATAGTGTTGAAGTTTCTAAAGAACTGATTGTGAAGGAAATAGAATGTGGGACTGGTAGAAATGCTGTTGAAAGCAAATTGAAAACTGTTGCTCCCACTGAGGAAAGGAATAAATCTAATGAAGTGGTTGGAACGAGTGATAAAAACTTCACTTTTTTGAAGAGTTCGGAGGATGGTGTGTTTGATCTACAGTCATGGAAGATTAATCTCAGCAATGGTCCTGTGCAGCCTTACCAAAATGATGGTGGAAGCAGGGCTAATAACACTTTGAAGGCCCCAATATCTCAGCAATCAAAATCTCAAATGAGTGAAACCCCTAATGCTGCTAACAGTAATGCAAAATCTGGGGAGGAAAATAATGTACCTGCTGAGAAAAAAACCTTGTGGCTTGGAAGTAGTGGTAAAGCCTCTATGGAACCAAAGTGTGACCTTGTTCAAAGCAAAGAATCTAGGGAACTTGATCGGCAGCTTAAATTTAATAGTTCATCTCTCAAAGAGAATTTGGCAGATAATGTCTTGTCAAGAACTGATGAGAATGTGAATTCATCTTCAGACGTATGGAAAGATTGTTCAGTCAAGACTGTTTTACCTTTCTCAAAGGGGGACATGTCTACTAGTTATAATGGTTCAACTTATTCTGACAAAAAAGAGGAAAAGAGAAGGGCAGAGATCAGTGATGCTAGGGCATATATAAAAGAGCAGGTGGATGAAGTGGGCAGAGCTTTTTACTTAGGGAAGTTGCAAAGCAGTTCTGAACAGAATACCATTGGCAGCTTAAGTTTTCCTCTTGCACTGGAGAAGCAAAAAGAAGAGTTTCCTAGGCTTCCTCCTGTAAAAATCAAGTCAGAAGATAAGCCCTTGACTATTAATTGGGGGGAGAAGTTTGAGTCTGATGGTATGGCTGCAAAACTCGCCGGTGCTGACAGCACTTTACTTATTGGGTCATATCTGGATGTTCCTATTGGACAGGAAATCAAAACGGCAGGTATGAGGAAGGCTACAGGGGGAAGTTGGCTGTCTGTAAGTCAAGGGATTACAGAGGATACATCTGATCTTGTTTCAGGTTTTGCAACAGTTGGTGATGGGTTGAGTGAATCTGTTGATTATCCAAATGAATATTGGGACTCAGATGAATATGATGACGATGATGACGTTGGGTACATGAGACAACCTATTGAAGATGAGGCCTGGTTTTTGGCACATGAAATTGATTACCCTAGTGACAACGAAAAGGGTACTGGGCACGGAAGTGTGCCAGATCCTCAGGAAAGAGGTCCAGCCAAAGATGAGGATGACGATCAATCTTTTGCTGAGGAGGATTCTTACTTCTCTGGTGAGCAATATATTCCAGGAAAGAATGTTGAGCCTGTCACTGCTTCAGATGATCCTATCGGTCTAACTGTTACTGAAATGTATGGAAGGACTAATGGTAATGATTTAATGGCTCAATATGATGGACAATTGATGGATGTAGAAGAACTGAATCTGATGCATGCAGAACCTGTCTGGCAGGGCTTTGTCAATCAGACTAATGATCTCATCATGCTGGGAGATGGAAAGGTTCTTAATCATAGTGGGAGATCGCGACTTGAGGACATGGAAGATGATCAGCATGGTTCAGTTAGGTCAATTGGGGTGGGGATCAACAGTGATGCCGCTGATATTGGCAGTGAAGTGCATGGAAGTTTGATTGGTGGTAGTAGTGAAGGGGATTTAGAATATTTCCGTGATCATGATGGTGCACTTGGGGGCTCCAAACACACTCATCATGATTTGGATAAGAATTCTATTAACAAATCATTCCAAAATAAGAAGAAAAACGACAAGAGTGAGGCAAATAAATATGTCATTGGGGGTGATAAAAAAACACTTACTGATTGCAACTTCTCATTTCCCCAATCTTTTAAAGATGGTCAGATGATTCAGGCTGGTTCCAGCAAGTCCCTTTGGTCAAATAATTGTAATGCAGATGAAACAGATGACTGTATTAATGCTTTTGGGGGATCTGATGACATGCTTTCTTCATGGAGGCGGAAGAGTAGTGATTCTTCACCTGTTAAAAGTTCTAGGGATGAGGATAATGCTAATGCGGTAAGATCCACAAACTCTTCCCCTGCTACAGTCTCAAATTATGGGTATGCTGATAAAGAGCATGTCAAGCTAGAAAAGGATGAAGAGGTAGGGATAATACCTAGGGAAGATGATCTAGGTGCATCACTAGAGGATGAAGAGGTTGCTGCTGTGCAAGAGCAGGCCCCATGCACTTCTCATTGTACGTATTCTTCTTACAATGCAAAAACTGGCTTCGAGGAGGACAAGAATTTCCATGTTGTTTTAAATTCTGTAATAGCTGGGCGCTATCACGTCACTGAGTATCTGGGATCTGCTGCATTTAGCAAAGCTATACAAGCTCATGACCTGCACACAGGCATGGATGTTTGTGTTAAAATTATAAAGAACAATAAGGACTTCTTTGACCAAAGCCTTGATGAGATCAAGCTTCTCAAGTATGTCAATAAGCATGATCCTGCAGACAAGTATCACATTCTGCGATTATATGATTATTTCTATTATAGAGAACATTTGTTAATAGTGTGTGAACTGCTTAAAGCCAACTTATACGAGTTCCACAAATTTAACAGAGAATCAGGGGGAGAAGTCTACTTCACAATGCCAAGATTGCAGTCAATTACCATTCAATGTTTGGAAGCACTTCAGTATTTACATAGCCTTGGACTAATACATTGTGACTTGAAGCCGGAGAATATTTTGGTTAAAAGCTATAGCAGATGTGAGGTGAAGGTCATTGATCTTGGAAGTAGTTGTTTCGAGACGGATCACCTTTGCTCATATGTTCAGTCCAGGTCCTATCGTGCTCCGGAGGTTATTTTGGGGCTTTCATATGACAAGAAGATTGATATCTGGTCCCTTGGATGCATCTTGGCAGAACTTTGTACTGGCAATGTCCTCTTCCAAAATGATTCCCCTGCAACATTACTTGCTCGGGTGATTGGGATTATTGGTCCTATTGATCAAAGTATGCTTGCAAAAGGACGGGATACATATAAGTACTTCACAAAAAATCATATGCTTTATGAACGGAATCAGGAAAGCAACAGGTTAGAATACCTAATTCCAAAAAAGACATCCTTGAGGCATAGATTGCCAATGGGGGACCAAGGCTTCATCGACTTTGTTTCTCATTTGCTTGAGGTTAACCCAAAGAAGCGGCCTTCTGCAGCCGAGGCCCTGAAGCACCCATGGTTATCATACCCTTATGAGCCAATATCATCTTGA	3777	0.4165	MGQLGLGEEEDEGDQGTENLGHKEVRNSMKENLQEETAGRAAGKGQEKGAYPLKPLHAKIQPATSHCSQVQYKYKYKGGIMPPVGKGLKMADTNSVEVILNFLRRNQFTRAEAALRSELSNLFDGNGFLQKPALEEKALCDISQNDKGKPVVEKQGLDSRDSVEVSKELIVKEIECGTGRNAVESKLKTVAPTEERNKSNEVVGTSDKNFTFLKSSEDGVFDLQSWKINLSNGPVQPYQNDGGSRANNTLKAPISQQSKSQMSETPNAANSNAKSGEENNVPAEKKTLWLGSSGKASMEPKCDLVQSKESRELDRQLKFNSSSLKENLADNVLSRTDENVNSSSDVWKDCSVKTVLPFSKGDMSTSYNGSTYSDKKEEKRRAEISDARAYIKEQVDEVGRAFYLGKLQSSSEQNTIGSLSFPLALEKQKEEFPRLPPVKIKSEDKPLTINWGEKFESDGMAAKLAGADSTLLIGSYLDVPIGQEIKTAGMRKATGGSWLSVSQGITEDTSDLVSGFATVGDGLSESVDYPNEYWDSDEYDDDDDVGYMRQPIEDEAWFLAHEIDYPSDNEKGTGHGSVPDPQERGPAKDEDDDQSFAEEDSYFSGEQYIPGKNVEPVTASDDPIGLTVTEMYGRTNGNDLMAQYDGQLMDVEELNLMHAEPVWQGFVNQTNDLIMLGDGKVLNHSGRSRLEDMEDDQHGSVRSIGVGINSDAADIGSEVHGSLIGGSSEGDLEYFRDHDGALGGSKHTHHDLDKNSINKSFQNKKKNDKSEANKYVIGGDKKTLTDCNFSFPQSFKDGQMIQAGSSKSLWSNNCNADETDDCINAFGGSDDMLSSWRRKSSDSSPVKSSRDEDNANAVRSTNSSPATVSNYGYADKEHVKLEKDEEVGIIPREDDLGASLEDEEVAAVQEQAPCTSHCTYSSYNAKTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPADKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQYLHSLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLSYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGPIDQSMLAKGRDTYKYFTKNHMLYERNQESNRLEYLIPKKTSLRHRLPMGDQGFIDFVSHLLEVNPKKRPSAAEALKHPWLSYPYEPISS	1258

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi17g00009	1258	SUPERFAMILY	Protein kinase-like (PK-like)	936	1251	IPR011009	-
	Sebi17g00009	1258	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	1073	1085	IPR008271	GO:0004672\|GO:0006468
	Sebi17g00009	1258	MobiDBLite	consensus disorder prediction	855	870	-	-
	Sebi17g00009	1258	Gene3D	Transferase(Phosphotransferase) domain 1	1001	1249	-	-
	Sebi17g00009	1258	CDD	PKc_DYRK_like	947	1249	-	-
	Sebi17g00009	1258	MobiDBLite	consensus disorder prediction	234	284	-	-
	Sebi17g00009	1258	MobiDBLite	consensus disorder prediction	834	871	-	-
	Sebi17g00009	1258	Gene3D	Phosphorylase Kinase; domain 1	941	1028	-	-
	Sebi17g00009	1258	FunFam	Putative serine/threonine-protein kinase dyrk2	941	1028	-	-
	Sebi17g00009	1258	ProSiteProfiles	Protein kinase domain profile.	947	1249	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi17g00009	1258	MobiDBLite	consensus disorder prediction	565	597	-	-
	Sebi17g00009	1258	FunFam	Serine/threonine-protein kinase ppk15	1026	1250	-	-
	Sebi17g00009	1258	MobiDBLite	consensus disorder prediction	1	49	-	-
	Sebi17g00009	1258	Pfam	Protein kinase domain	947	1249	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi17g00009	1258	SMART	serkin_6	947	1249	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi17g00009	1258	MobiDBLite	consensus disorder prediction	234	278	-	-
	Sebi17g00009	1258	MobiDBLite	consensus disorder prediction	16	33	-	-
	Sebi17g00009	1258	PANTHER	DUAL SPECIFICITY PROTEIN KINASE	497	1249	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi17g00009	Sebi-Chr17	187893	212880	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi17g00009	946	1244	MAP Kinase Gene Family	AT5G19010	31.661	4.54e-31	128

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_DYRK-PRP4	Sebi17g00009		Pkinase	2.4e-52	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi17g00009	-		-	mtr:25496682	1974.9