Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi179g00021 ATGTCACCTCCGTCATTTGCATCAGGAAGTGATGCCAGTGACGTAACCCATCAATTACCAATGAACAGCGAAGCATTTGACCCACATTCAGAGTTGGATCAACCCCCTGCGTTCAAGAGGGCCAGGACTTTTGATAGCAGCCACTCCAATGCCCCTCCAAGGATGATTCAACCACCACCAAACCCCCAATTCAACAAAGGAACGAGTCACATTTTCTTCAAGACTCACATTTGTGCCAAGTTCAGAATTGGTGCATGTAGGAACGGTGAGAACTGCAATTTTGCACATGGAGTTGAAGACACAAGGCAGCCACCACCAAATTGGCAGAAGCTTGTTGGCTTATGTAATGAAGAACGGTCTTTATCAGGGAATTGGGATGAGGACCAGAAAATAATTCATAAGATGAAGCTGTGCAAGAAGTATTACAATGGAGATGAACTCTCTTATGGTGAAAAGTGTAGTTTTCTTCATGAGGACCTCGCCAAGTTCAGGGATGATTCGGGGAGGTTTAGGGAGAGCTCATCAATAAGCATAGGAACTAATGGATACCCAAAGTCCTATGGTGACGACTCTAATAATTCACAAGGTAATAGAGTTGTGAACACTGGCCAAAATGTTTCACGGGGAAATGGAAAGTTCACTTATTGGAAGACTAAACTATGTATCAAGTGGGAGACAATAGGTCGTTGTTCCTTTGGGGAGGATTGTCACTTTGCCCATGGACAAGGAGAGTTACAATTTCCTGGACGACGCATTGAAGCCGAAACTGCAGGTGCCATTTCAAATTCAACTAAAGTTATCATTCCAATTATACCAAAAGCCTTATCAGTTTCTTCCAATGATGCTCCTACTAACTACATAGCAAGTCTACCTCTGCCAAATGAAGAGGTGGAGGGTAAGAAGAATTTACTCAAGTGGAAAGGAACCAAGAAGATAAATCAAATTTATGGTGATTGGATTGATGATTTACCGCTGGTTCCCAACTTGCCAAGTAGAGCCGAGACCTGA 1008 0.4315 MSPPSFASGSDASDVTHQLPMNSEAFDPHSELDQPPAFKRARTFDSSHSNAPPRMIQPPPNPQFNKGTSHIFFKTHICAKFRIGACRNGENCNFAHGVEDTRQPPPNWQKLVGLCNEERSLSGNWDEDQKIIHKMKLCKKYYNGDELSYGEKCSFLHEDLAKFRDDSGRFRESSSISIGTNGYPKSYGDDSNNSQGNRVVNTGQNVSRGNGKFTYWKTKLCIKWETIGRCSFGEDCHFAHGQGELQFPGRRIEAETAGAISNSTKVIIPIIPKALSVSSNDAPTNYIASLPLPNEEVEGKKNLLKWKGTKKINQIYGDWIDDLPLVPNLPSRAET 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi179g00021 335 ProSiteProfiles Zinc finger C3H1-type profile. 72 99 IPR000571 GO:0046872
Sebi179g00021 335 ProSiteProfiles Zinc finger C3H1-type profile. 215 243 IPR000571 GO:0046872
Sebi179g00021 335 MobiDBLite consensus disorder prediction 1 20 - -
Sebi179g00021 335 MobiDBLite consensus disorder prediction 181 204 - -
Sebi179g00021 335 FunFam Zinc finger CCCH domain-containing protein 211 247 - -
Sebi179g00021 335 MobiDBLite consensus disorder prediction 1 66 - -
Sebi179g00021 335 SUPERFAMILY CCCH zinc finger 214 246 IPR036855 GO:0046872
Sebi179g00021 335 SMART c3hfinal6 72 98 IPR000571 GO:0046872
Sebi179g00021 335 SMART c3hfinal6 215 242 IPR000571 GO:0046872
Sebi179g00021 335 SMART c3hfinal6 132 159 IPR000571 GO:0046872
Sebi179g00021 335 Gene3D - 71 169 - -
Sebi179g00021 335 Gene3D - 212 247 - -
Sebi179g00021 335 PANTHER CCCH ZINC FINGER/TIS11-RELATED 29 164 IPR045877 GO:0003729
Sebi179g00021 335 ProSiteProfiles Zinc finger C3H1-type profile. 132 160 IPR000571 GO:0046872
Sebi179g00021 335 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 73 97 IPR000571 GO:0046872
Sebi179g00021 335 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 216 242 IPR000571 GO:0046872
Sebi179g00021 335 SUPERFAMILY CCCH zinc finger 70 103 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi179g00021 Sebi-Chr179 952671 954629 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi179g00021 zf-CCCH 2.9e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi179g00021 - - gmx:100793865 483.796