Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi179g00003 ATGGAGGCTTCACCATCTGCAACAGCACAATCACCTTTGAAAAACAAGAGTGCATCTGCACATGATATGTTGCTGGGATTTATTGCAGGCATTTCAACTGTAATTGTTTTGGCCTTATTGCACTACCTCTTCAGGAGAAAGGTCATTCCATTTCTTAAGCAACACAAGACACTGAAAGGAAAGGGGTATAAAAGCTTGAAATATGACAAAATATCATTGAGGCGTTTTGATTTTGAGGAACTAGAGAGGGCTACCAAAAATTTTAGCCAAGATTGCTTAGTGGGTTCTGGTGCATTTGGAAATGTCTACAAGGGAACCTTTGACTTAGAAGGAACACTAGCCATTAAGAGAGCTCATTCTGAATCATTCTTAAGTGTGGAAGAATTCAGAAATGAAGTTAGGCTCCTTTCAGCAGTAAAGCACAGGAATCTTATTGGTCTGGTTGGATATTGTGAAGAACCAGAACAACATGGAGCCAAAATACTAGTCTATGAATATGTACCAAATGGTTCACTCCTTGAGTACATGATGGGGAACAGAAGGAGGAGCTTAACTTGGAAGCAAAGAGTAAACATAGCAATAGGAGCAGCTAGAGGCATAGCTTATTTGCATGAAGGGGTGAAGCCAAGCATAATTCATCGTGACATCAAACCAAGTAACATCTTATTAGGGGAAGGGTTTGAGGCTAAGGTGTCAGATTTTGGGCTGGTGAAATCAGGGCCTACTGGGGATCAATCACATGTCAGTAGCCAAATCAAAGGGACACCAGGATACCTTGACCCTGCTTATTGTTCAAGCTTCCATTTGACCAAATTCAGTGATGTTTATAGCTTTGGTGTCATACTTTTGCAACTTATTTCAGCTAGACCTGCTGTGGACAGCACTGGAAACCAAAGCAATCAACATATTATTGACTGGGCAAGGCCTAGTATAGAGAAGGGTAACGTTGAAGAAATTGTGGATGCAAATTTATTATGTCAAAGTGAACCATGTAATATGAAAGTTATGCTAAAGATGGGGCAACTTGCTTTAAGATGTGTGGCTGAAGAGCCAAAACGTCGCCCTACAATGACCCAGGTGTGTCAAGAGCTAGAGCAAGCCCTTTACTCAGATGATAGCTTCAATAACAAGCACCCTTCTAAAGGTTTGACCCATGGATCAGCGGAACACTATGATTGTTCACAAAGCTTTGTGAGCATAGACGGTGTTGGATTTCAGAAATTCCATATTGATATGGATAGCTTGTCCTTTCAGAGCACAAAATTAATGTGCCTAGAAAATAATAGTATTAGTATTGACATTGACAAGAACAATTTGAGGAGAATACAAGAGAATGAGACCATTTAG 1347 0.4024 MEASPSATAQSPLKNKSASAHDMLLGFIAGISTVIVLALLHYLFRRKVIPFLKQHKTLKGKGYKSLKYDKISLRRFDFEELERATKNFSQDCLVGSGAFGNVYKGTFDLEGTLAIKRAHSESFLSVEEFRNEVRLLSAVKHRNLIGLVGYCEEPEQHGAKILVYEYVPNGSLLEYMMGNRRRSLTWKQRVNIAIGAARGIAYLHEGVKPSIIHRDIKPSNILLGEGFEAKVSDFGLVKSGPTGDQSHVSSQIKGTPGYLDPAYCSSFHLTKFSDVYSFGVILLQLISARPAVDSTGNQSNQHIIDWARPSIEKGNVEEIVDANLLCQSEPCNMKVMLKMGQLALRCVAEEPKRRPTMTQVCQELEQALYSDDSFNNKHPSKGLTHGSAEHYDCSQSFVSIDGVGFQKFHIDMDSLSFQSTKLMCLENNSISIDIDKNNLRRIQENETI 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi179g00003 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Sebi179g00003 448 Gene3D Transferase(Phosphotransferase) domain 1 167 384 - -
Sebi179g00003 448 Gene3D Phosphorylase Kinase; domain 1 52 166 - -
Sebi179g00003 448 SUPERFAMILY Protein kinase-like (PK-like) 67 365 IPR011009 -
Sebi179g00003 448 SMART serkin_6 88 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi179g00003 448 ProSitePatterns Protein kinases ATP-binding region signature. 94 116 IPR017441 GO:0005524
Sebi179g00003 448 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 15 389 - -
Sebi179g00003 448 Pfam Protein tyrosine and serine/threonine kinase 93 364 IPR001245 GO:0004672|GO:0006468
Sebi179g00003 448 FunFam Putative LRR receptor-like serine/threonine-protein kinase 54 166 - -
Sebi179g00003 448 CDD STKc_IRAK 94 366 - -
Sebi179g00003 448 ProSiteProfiles Protein kinase domain profile. 88 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi179g00003 448 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 167 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi179g00003 Sebi-Chr179 90024 93301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi179g00003 74 368 Receptor kinase-like Gene Family AT1G30570 44.595 1.55e-78 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Sebi179g00003 PK_Tyr_Ser-Thr 2.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi179g00003 - - gmx:106794267 700.664