Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi178g00084 ATGAACGCTCTTACCAGAGGCCGAGCAGAAGATGAAGATATTGAAGCAGGGTTAGGCGAGTTTCATCCGTTTTCTCCAGAAATCGCTAAAGCACAGTTCCCAGCAGACTTCAAGGAACCGAGATTGAAGGATTATGATGGCACTACGGATCCCCAAAAGAATGACCAATTACAGACTGTGGTCGCTTACGATGCTAAGCTGTGCCAGCTCCTCGAGGAGTACACCCAGATCCTAGTGGTGAATGCCGACAATGTCGGATCCAACCAACTCCAGAACATTCGTAAGGGTCTTCGTGGTGATTCCATTGTTCTCATGGGAAAGAACACCATGATGAAGCGTTCTGTTCGGATGCACGCTGAGAATACCGGGCAACAACGTCTTTCTCAGCCTTATCCCCCTCCTTGTTGGTCGGAGCTCCTGCTCGTGTGGGTTTGGTTTGCACCAATTGATGTCGTTGTTCCTCCTGGCAACACAGGGCTCGACCCCTCTCAGACCTCTTTCTTCCAGGTGCTCAACATTCCAACCAAGATTAACAAGGGTACTGTGGAAATTATTACCCCTGTGGAACTCATTAAGAAGGGAGACAAGGTTGGCTCCTCAGAAGCTGCATTGCTTGCCAAGCTAGGCATAAGGCCCTTCTCATATGGACTTGTGGTCCTTTCTGTTTATGATAATGGTTCAGTGTTTAGCCCTGAGGTTCTTGATCTTACTGAGGATGACCTCATTGGGAAGTTTGCTATTGGTGTCTCAATGGTGACTTCTCTTTCATTGGCCATCTCATACCCAACACTCGCAGCTGCACCACATATGTTTGTCAATGGTTATAAGAACGTTCTTGCTGTTGCTGTTGAGACAGAGTATTCTTTCCCACAGGCAGACAAGGTCAAGGAGTACCTCAAGGACCCAAAGGAAAAGAAAGAAGAGCCAGCTGAAGAATCTGATGATGATATGGGATTCTCTTTGTTTGACTAA 972 0.4722 MNALTRGRAEDEDIEAGLGEFHPFSPEIAKAQFPADFKEPRLKDYDGTTDPQKNDQLQTVVAYDAKLCQLLEEYTQILVVNADNVGSNQLQNIRKGLRGDSIVLMGKNTMMKRSVRMHAENTGQQRLSQPYPPPCWSELLLVWVWFAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIGKFAIGVSMVTSLSLAISYPTLAAAPHMFVNGYKNVLAVAVETEYSFPQADKVKEYLKDPKEKKEEPAEESDDDMGFSLFD 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi178g00084 323 Pfam Insertion domain in 60S ribosomal protein L10P 147 210 IPR040637 -
Sebi178g00084 323 PIRSF L10E 51 131 IPR030670 GO:0042254
Sebi178g00084 323 PIRSF L10E 144 307 IPR030670 GO:0042254
Sebi178g00084 323 PIRSF L10E 302 323 IPR030670 GO:0042254
Sebi178g00084 323 FunFam 60S acidic ribosomal protein P0 145 213 - -
Sebi178g00084 323 Gene3D - 145 214 IPR043164 -
Sebi178g00084 323 MobiDBLite consensus disorder prediction 298 312 - -
Sebi178g00084 323 MobiDBLite consensus disorder prediction 298 323 - -
Sebi178g00084 323 Pfam Ribosomal protein L10 65 120 IPR001790 -
Sebi178g00084 323 Gene3D - 60 132 IPR043141 -
Sebi178g00084 323 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 61 127 - -
Sebi178g00084 323 SUPERFAMILY Ribosomal protein L10-like 65 126 IPR043141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi178g00084 Sebi-Chr178 1443386 1445648 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi178g00084 61 322 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 66.667 1.19e-134 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi178g00084 K02941 - gmx:547816 394.045