Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi178g00067 ATGTCTGATGATGAAGATGACCAAGTAGACAGTGATGCCAATCTGTTTGATGGTGGTTTGGATGGTTCAGATAGCATGGGATTTGGCCCTCTTATTCCAACAGAGAATGAGAGGTCCCTCATGGAACGTGTAAGACATGAGTTAAAGCATGAATTGAAACAGGGTTACAAAGATAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACCACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAGGATAAGGCAAGATTGGTGCAGGAAACGGGTTTGCAATTAAAGCAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGCACAGCAATCCTTCAACTTCTAATGTCTTGAAGAGCAAGCGCAAAAGTCATGCTGTGCTTGGCAGTGTATTCATGGAAAGCCGGTGA 471 0.4352 MSDDEDDQVDSDANLFDGGLDGSDSMGFGPLIPTENERSLMERVRHELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSNVLKSKRKSHAVLGSVFMESR 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi178g00067 156 ProSiteProfiles ELK domain profile. 47 67 IPR005539 GO:0003677
Sebi178g00067 156 SUPERFAMILY Homeodomain-like 69 134 IPR009057 -
Sebi178g00067 156 SMART ELK_2 47 68 IPR005539 GO:0003677
Sebi178g00067 156 FunFam homeobox protein knotted-1-like 3 isoform X1 68 129 - -
Sebi178g00067 156 Gene3D - 68 129 - -
Sebi178g00067 156 MobiDBLite consensus disorder prediction 1 33 - -
Sebi178g00067 156 SMART HOX_1 69 134 IPR001356 GO:0003677
Sebi178g00067 156 Pfam ELK domain 47 68 IPR005539 GO:0003677
Sebi178g00067 156 ProSiteProfiles 'Homeobox' domain profile. 67 130 IPR001356 GO:0003677
Sebi178g00067 156 CDD homeodomain 70 131 IPR001356 GO:0003677
Sebi178g00067 156 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 33 132 - -
Sebi178g00067 156 Pfam Homeobox KN domain 87 126 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi178g00067 Sebi-Chr178 1189290 1190350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi178g00067 1 143 Homeobox Transcription Factor Family AT5G25220 90.210 2.46e-91 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sebi178g00067 Homeobox_KN 4.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi178g00067 - - pvu:PHAVU_009G090500g 286.189