Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi178g00059 ATGCTGCTTCTTGTTATTCACGAACCCATTTGGGTTCATGTCACTGCAGACCCTCCTGTTTCTTCACCTCAACTCACTCCACTTTCCACCACCATGTCTACTTTCTCCCCAGGTACTGAGGTGAAGGAGGAGCACCACCAAAGAGATTTACACAAGAAAGTGGTAATAGGTCTTGTTGTAGCCAGTAGTGCACTTGGTACAATCATTTTGAGTTTGTTATGCTTCTGGGTATATAAAATCAAGTATGTGTCAAAATCCAATAAGAAAAATGTTCAAAGTTCAGGTCAAGATGCAGAGAAGGGGCTCCCTTTAGCACCATTTTTGAGTAAAATCAGTTCCATCAAGTTGGTTGGTATGAAAGGGTCTCTTCCAATAATTGATTATGAACAAATAGAAAAATCCACAAATAATTTTGAGGAAGGTAACATCTTGGGTGAGGGCGGTTTTGGACGTGTTTACAAGGCTCGATTGGATGATAATTTGGATGTTGCCGTCAAGAAACTACGCTGTGAAAGTCAAAATGCTACCAGAGAATTTGAGAACGAGGTGGATTTGTTAAGTAAAATTCAGCATCCAAATATAATTTCTTTACTGGGTTGTAGCATTGATGACAACACAAAGTTTATTGTGTATGAGTTGATGCAAAATGGGTCCTTGGAAGCTCAGTTACATGGACCATCTCGTGGCTCAGCATTGACTTGGCATATGAGGATGAAGATTGCTCTTGACACTGCAAGAGGATTAGAATATCTGCATGAGCACTGTCACCCTGCAGTGATCCATAGAGATATGAAATCTTCTAATATTCTTTTAGATGCAAACTTCAATGCCAAGCTGTCTGATTTTGGTCTTGCAATAACTAATGGGTCCCAAAACAAGAACATTAAGCTTTCAGGGACATTGGGGTACGTAGCCCCGGAGTATCTTCTGGATGGTAAATTGACGGATAAAAGTGATGTATATGCTTTTGGGGTTGTGCTTTTAGAGCTCCTATTAGGAAGGAAGCCTGTGGAAAAACTTGCACCTGCTCAGTGTCAATCCATTGTAACATGGGCCATGCCGCATCTCACTGATAGGTCCAAGATTCCACACATTGTGGATCCAGTGATTAAGGATACAATGGATCTCAAGCACTTATACCAGGTTGCTGCTGTAGCTGTGTTGTGCGTGCAACCAGAGCCAGGTTATCGCCCGCTGATCACAGATGTTCTTCACTCTCTTGTCCCTCTTGTTCCCGTGGAGCTTGGAGGAACACTCAGAGTTTCACGAGTGATACAGCATGTCTCTCTTGCTGATCCACCTCAGAATTCCAGTCATTGA 1320 0.4227 MLLLVIHEPIWVHVTADPPVSSPQLTPLSTTMSTFSPGTEVKEEHHQRDLHKKVVIGLVVASSALGTIILSLLCFWVYKIKYVSKSNKKNVQSSGQDAEKGLPLAPFLSKISSIKLVGMKGSLPIIDYEQIEKSTNNFEEGNILGEGGFGRVYKARLDDNLDVAVKKLRCESQNATREFENEVDLLSKIQHPNIISLLGCSIDDNTKFIVYELMQNGSLEAQLHGPSRGSALTWHMRMKIALDTARGLEYLHEHCHPAVIHRDMKSSNILLDANFNAKLSDFGLAITNGSQNKNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGRKPVEKLAPAQCQSIVTWAMPHLTDRSKIPHIVDPVIKDTMDLKHLYQVAAVAVLCVQPEPGYRPLITDVLHSLVPLVPVELGGTLRVSRVIQHVSLADPPQNSSH 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi178g00059 439 FunFam probable receptor-like protein kinase At1g80640 214 412 - -
Sebi178g00059 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Sebi178g00059 439 SMART serkin_6 138 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi178g00059 439 Gene3D Transferase(Phosphotransferase) domain 1 214 412 - -
Sebi178g00059 439 Gene3D Phosphorylase Kinase; domain 1 107 213 - -
Sebi178g00059 439 ProSiteProfiles Protein kinase domain profile. 138 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi178g00059 439 ProSitePatterns Protein kinases ATP-binding region signature. 144 167 IPR017441 GO:0005524
Sebi178g00059 439 PANTHER OS01G0750732 PROTEIN 22 410 - -
Sebi178g00059 439 SUPERFAMILY Protein kinase-like (PK-like) 116 407 IPR011009 -
Sebi178g00059 439 FunFam Protein kinase superfamily protein 105 213 - -
Sebi178g00059 439 CDD STKc_IRAK 144 410 - -
Sebi178g00059 439 Pfam Protein kinase domain 138 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi178g00059 Sebi-Chr178 1034014 1036771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi178g00059 16 353 Receptor kinase-like Gene Family AT1G80640 48.837 5.22e-101 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Sebi178g00059 Pkinase 6.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi178g00059 - - gmx:100812044 642.114