Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi178g00033 ATGATGGAACCAACATGCGTAGATACTTCTCTCAACCTCAACAGTATTCCCTCTCTCGAAACCGATGCTGCGGCTAAGGTTTTGGTTGAGGAATTGCAGCGTCTAAGTTGTGAGAATAAGAGGTTAACGGAGACGCTGAACCACATGTACGAAAACTATCTTGTTTTGCAAAAGCATTTGAGTCAATTCAATAACCAAATGAGGAACACGGATTTTGAAAAGGAATTAGCGGCGACACCATCGGTAGCGTTGAAGAGAAAGGTGGAGAATGAGAATTGTATGAATCTGTTTGGTGTTAGCGAGTGCAGCACCACTACTGAGGAAGAGACATTCAAAAGGCCCAAGCATAACACCTCACCAAAGGTTTCCAAAGTTCTTGTACGAACAGAGGCATCTGATACTAGCTTATATGTGAGGGATGGATATCAGTGGAGAAAATATGGCCAGAAAGTCACCAGAGATAACCCTTCTCCTAGGGCTTACTTCAAGTGCTCCTTTGCTCCCACCTGCCCAGTGAAGAAGAAGGTGCAAAGAAGTGCAGAAGACCCTACGGTACTGGTGACAACTTATGAAGGAGAGCACAACCATACGCATCATCACCAAGCGGAAATATCACTGACTTCGAGCCAAAGTGAGAATATCTTCCCTGCCCCGGCAGGTTCAGCATCACCCAAGAATCGGAGCACAGTTGCAGGTCCAACTGTAACACTTGACTTGGTCCAGTCAAAATTGGTTGACAATGCCGAAAAGTCATCTATCCAGCAGTTTTTAGTTCAACAAATGGCTACTTCTTTGACAAGAGATCCTAATTTCACAGCCGCACTTGCTACTGCCATTTCTGGAAGAATTCTAGACCATTCTTCTATAGAAAAACGGTGA 879 0.4448 MMEPTCVDTSLNLNSIPSLETDAAAKVLVEELQRLSCENKRLTETLNHMYENYLVLQKHLSQFNNQMRNTDFEKELAATPSVALKRKVENENCMNLFGVSECSTTTEEETFKRPKHNTSPKVSKVLVRTEASDTSLYVRDGYQWRKYGQKVTRDNPSPRAYFKCSFAPTCPVKKKVQRSAEDPTVLVTTYEGEHNHTHHHQAEISLTSSQSENIFPAPAGSASPKNRSTVAGPTVTLDLVQSKLVDNAEKSSIQQFLVQQMATSLTRDPNFTAALATAISGRILDHSSIEKR 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi178g00033 292 ProSiteProfiles WRKY domain profile. 140 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi178g00033 292 SUPERFAMILY WRKY DNA-binding domain 135 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sebi178g00033 292 FunFam WRKY transcription factor 40 123 200 - -
Sebi178g00033 292 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 24 283 IPR044810 GO:0003700
Sebi178g00033 292 SMART WRKY_cls 138 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi178g00033 292 Gene3D WRKY domain 121 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sebi178g00033 292 Pfam WRKY DNA -binding domain 140 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi178g00033 292 Coils Coil 25 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi178g00033 Sebi-Chr178 422412 424425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi178g00033 7 291 WRKY Transcription Factor Family AT1G80840 46.865 1.22e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Sebi178g00033 WRKY 5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi178g00033 - - gmx:100127373 399.053