Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi178g00020 ATGGGAATATATCTCAGTACTCCCAAAACAGAAAAGTTTTCTGAAGATGGTGAAAATGACCGTCTTAGATATGGTTTATCATCCATGCAAGGGTGGCGTGCAACAATGGAAGATGCTCATGCTGCATATACTGATCTGGATGAGTCCACTTCGTTTTTTGGTGTCTATGATGGTCATGGAGGTAAGGTGGTTGCAAAGTTCTGTGCTAAGTTTCTTCACCAACAGGTGCTCAAAAGTGAAGCATACTTAGCTGGAGATGTAGGAACCGCTCTTCAGAAAGCTTTTTTAAGAATGGATGAGATGATGCGTGGTCAAAAGGGATGGAGGGAATTATCAAACTTGGGGGATAAGATAAACAAGTTTACTGGGATGATAGAAGGGTTGATTTGGTCTCCACGAGGCAGTGATGGTAATAACCAAGTTGATGATTGGGCTTCTGAGGAGGGGCCTCACTCAGATTTTGCTGGACCAACTTCAGGAAGCACTGCCTGTGTTGCAGTTATTAGAAATGGCCAACTTGTCGTTGCAAATGCTGGTGATTCACGATGTGTACTATCTAGGAAGGGCCAGGCATACAATTTGTCTAGAGACCACAAACCTGATCTTGAAATTGAGAGCGAAAGAATCTTAAGAGCTGGTGACATGGAATTTAAACAAAATAAATTTCTCCCGCCTGAAAAACAAATTGTGACTGCCAATCCGGATATAAACACTGTTGAGCTTTGTGATGAAGATGAATTTATGGTGCTAGCCTGTGATGGCATATGGGATTGCATGTCAAGCCAACAATTGGAAACAAAACTTTCTGCAGTGTGTGAAAGAGTACTTGACCGGTGTTTGGCACCATCAACAGCTAATGGCGATGGATGTGATAACATGACTATGATCTTGGTGCAGTTCAAAAGACCTGCCCAGTCTAGTGCACCAGCAGAAGAGCAATCCTCATCAAATGGACAAGCTGAAACAGAACCAAAACTGGAAAGAAGTGAAATTTAA 996 0.4237 MGIYLSTPKTEKFSEDGENDRLRYGLSSMQGWRATMEDAHAAYTDLDESTSFFGVYDGHGGKVVAKFCAKFLHQQVLKSEAYLAGDVGTALQKAFLRMDEMMRGQKGWRELSNLGDKINKFTGMIEGLIWSPRGSDGNNQVDDWASEEGPHSDFAGPTSGSTACVAVIRNGQLVVANAGDSRCVLSRKGQAYNLSRDHKPDLEIESERILRAGDMEFKQNKFLPPEKQIVTANPDINTVELCDEDEFMVLACDGIWDCMSSQQLETKLSAVCERVLDRCLAPSTANGDGCDNMTMILVQFKRPAQSSAPAEEQSSSNGQAETEPKLERSEI 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi178g00020 331 SMART PP2C_4 13 298 IPR001932 -
Sebi178g00020 331 SMART PP2C_SIG_2 28 300 IPR001932 -
Sebi178g00020 331 MobiDBLite consensus disorder prediction 301 331 - -
Sebi178g00020 331 ProSiteProfiles PPM-type phosphatase domain profile. 23 300 IPR001932 -
Sebi178g00020 331 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Sebi178g00020 331 Pfam Protein phosphatase 2C 155 216 IPR001932 -
Sebi178g00020 331 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Sebi178g00020 331 PANTHER PROTEIN PHOSPHATASE 2C 18 299 IPR015655 GO:0004722|GO:0006470
Sebi178g00020 331 SUPERFAMILY PP2C-like 3 302 IPR036457 -
Sebi178g00020 331 CDD PP2Cc 23 300 IPR001932 -
Sebi178g00020 331 Gene3D - 1 301 IPR036457 -
Sebi178g00020 331 MobiDBLite consensus disorder prediction 306 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi178g00020 Sebi-Chr178 259487 265047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi178g00020 1 312 PP2C-type Phosphatase Gene Family AT2G25070 69.501 0.0 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi178g00020 K17499 - qsa:O6P43_015776 568.155