Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi178g00003 ATGGGTTATCTCAATTCAGTTTTGTCCTCTTCAACCCAGATTCATGCTACCATTGACTCACCTCCCGTGAGTGGTGGCGGTCTCAGTCACAATGGCAAATTCAGCTATGGGTATGCTAGCTCTCCTGGCAAGAGATCTTCCATGGAAGATTTTTATGAGACGAGAATTGATGGTGTTGATGGTGAAATTGTTGGCCTTTTTGGAGTTTTTGATGGTCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGAAAAACCTGTTTAGTAATTTGATCAATCATCCAAAATTCATTTCTGATACCAAATCAGCAATAGCTGATGCATATAACCATACCGACTCTGAATTTCTGAAATCAGAAAATAGTCATAACAGAGATGCTGGCTCTACTGCTTCCACTGCCATTCTAGTTGGTGACCGCTTGCTTGTTGCAAATGTTGGGGACTCCAGGGCTGTCATATGCAGGGGTGGTAATGCAATTGCTGTTTCTAGAGATCACAAACCAGACCAAACTGATGAGAGGCAAAGGATTGAAGATGCAGGAGGCTTTGTTATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCTCGTGCATTTGGTGATAGACTCCTGAAGCAGTATGTTGTTGCTGACCCAGAAATCCAGGAAGAGAAAGTTGACAGTTCTCTTGAGTTTCTTATTTTGGCCAGTGATGGGCTATGGGATGTTGTCTCAAATGAGGAAGCTGTTGCTATGATTAAACCAATTGAGGATGCAGAGGAGGCAGCAAAGAGACTGATGCAAGAAGCCTCTCAGAGAGGTAGTGCTGACAACATCACTTGTGTTGTTGTTCGTTTCGTGATGAACCAAGGCACCTCTTCCCATAGCCACAGCAACACCTCTTCTCTTGGCCATAGCAACACCTCTTCTCAGGGCCATAGCAACACCTCTTCTATTGGCCACAGCAACAACTCTTCTATTGGCCACAACAACACCTCTTCTCATGGCCATAGCAACACCTCTTCTCATGGCCAGAGCAACACCTCTTCTATTGGCCACAGCAACACCTCTTCTCATGGCCACGACAACACCTCTTCTGATGGCCACAGTAACACCTCTTCTATTGGCCACAGCAACACCTCTTCCCTTAGCCATAACAACACCTTGTAA 1155 0.4554 MGYLNSVLSSSTQIHATIDSPPVSGGGLSHNGKFSYGYASSPGKRSSMEDFYETRIDGVDGEIVGLFGVFDGHGGARAAEYVKKNLFSNLINHPKFISDTKSAIADAYNHTDSEFLKSENSHNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDSSLEFLILASDGLWDVVSNEEAVAMIKPIEDAEEAAKRLMQEASQRGSADNITCVVVRFVMNQGTSSHSHSNTSSLGHSNTSSQGHSNTSSIGHSNNSSIGHNNTSSHGHSNTSSHGQSNTSSIGHSNTSSHGHDNTSSDGHSNTSSIGHSNTSSLSHNNTL 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi178g00003 384 Gene3D - 27 287 IPR036457 -
Sebi178g00003 384 MobiDBLite consensus disorder prediction 287 384 - -
Sebi178g00003 384 SMART PP2C_4 25 279 IPR001932 -
Sebi178g00003 384 ProSiteProfiles PPM-type phosphatase domain profile. 35 281 IPR001932 -
Sebi178g00003 384 SMART PP2C_SIG_2 13 281 IPR001932 -
Sebi178g00003 384 CDD PP2Cc 34 281 IPR001932 -
Sebi178g00003 384 FunFam probable protein phosphatase 2C 59 27 285 - -
Sebi178g00003 384 ProSitePatterns PPM-type phosphatase domain signature. 66 74 IPR000222 GO:0043169
Sebi178g00003 384 PANTHER PROTEIN PHOSPHATASE 30 280 IPR015655 GO:0004722|GO:0006470
Sebi178g00003 384 Pfam Protein phosphatase 2C 64 274 IPR001932 -
Sebi178g00003 384 SUPERFAMILY PP2C-like 29 281 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi178g00003 Sebi-Chr178 75049 79194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi178g00003 1 300 PP2C-type Phosphatase Gene Family AT4G31750 87.667 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi178g00003 K17506 - gmx:100797070 534.643