LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi177g00084	ATGGTTTCAACGAGACGCAGTGGATCTCTTTCTTCCAACAAAAGATCTTCTTCGTCCTCTGACGATAAGTCTCCTTCACCTAAGCGTCACAAGGTAGACAATGGCGGTTCGTCGGAGAAACCGTCGCCGGCGTCGGAAAATTCCAAGGAATTCTGTACTCCAGAGCCCGTGCCTGATCCCGGAGAATGTGGCTCCGGCGATCCTCCGATCGCCGGAGTAGATGCCACTGATGCTGTGAGTCCTCCCAAGGGTGATGCTGATGCAAAGCCGGCTGTGCCTGTGACGACGCCGGTTGCTGATGCCACATGTCGGTCGTTCTCTTCGTGGGCTATGTATCAGGCACAAAATACGAAATATGAAGCTTCAGCTGCTCCCTGGTGCAGGTTCTTGTCGCAGACTGCACAGAATCCAAATGTGGCTGTTCGCACACCAAATTTCACGATTGGTTCTAGTAGAAATTGCAATTTTCCATTGAAGGATCAAACTATAAGTGGAAATTTATGCAAGATAAGGCATACCCAGCACGGGGAAAGTTCTGTAGCTGTGCTAGATAGTACGGGTAGCAAAGGATCTGTGCTAGTAAATGGGACACTCATCAAGAAGAATAACAGCTGTGTGCTTAACTCGGGTGATGAGATTTTCCAGCAACTGAATAATGAGGTTGTGGTCAGGGGTGCAGAAGTTCAAAGTAGTGTTAAGAAATATCTGCAGGTTGAAAGGAGAAGTGGAGACTCTTCAGCTGTGGCTGGGGCCTCTATTTTGGCTTCTCTTTCTAACCTCAGACAGGACCTTCCAAAATGGAAATCTCCATCTAAGACCTTAGTTCCAAATGTGCAGAGTGATAAAGCAGCTGATATTGGAGCAAGCAACAAGAGTTCAATGATGGATTGTGATCTGGAGGCTGGCACGAAGGCAGGCAATGTAAAACTCTCTGGGGTGAATGATTTCCTTAGTCCTTTCTTCCGAATCTTAGCTAGATCTAATTGTAAACTAAAATTGAGCAAAAGTATCTGTAAACAGGTGTTGGAAGAAAGAAATGGGATGTGGGATATGCAAGCCGCATTGACTTCGGGTACATCTGTGCGCTGTGCAGTGTTTAAGGAAGATGTTCATGATGCAATACTGGATGGAAAAGAAATGGATGTGTCTTTTGACAACTTCCCATACTATTTGAGTGAGAATACAAAAAATGTCCTGGTGGCAGCTTGCTTTATACACCTCAAACATAAAAAACATGAAAAGTACACTGCAGATCTCACTACCATAAACCCTCGTATTCTGCTATCAGGACCTGCAGGGTCAGAAATATATCAGGAGATGTTGGTAACAGCACTTGCAAATTACTTTGGAGCTAAGTTGCTCATATTTGATAGCTACATACTTTTGGGTGGTTTATATTCCAAGGAAGTTGAGCTACTCAAAGATGGATTTAATGCTGAAAAATCCTGCAGCCGCACTAAACAAAGTCCTACAGTCCCAGACATGGCTAGGAGCATGGACCCATTAGCTAATGAAACAGAGACGCCTAGCTCTACTTTAAATGGTCTTGAGTCTCAACCTAAGTTGGATAATGATACTGATAACATACCATCCACCTCTGGGACAGCTAAAAATTGCTCGTTCAAATTAGGTGATAGAGTGAAATTTAACTCTTCATCTTCTTGTGGCTTGCATCAGACATCTTCAAGGGGCCCACCTAATGGTAGTCGGGGGAAGGTTGTCTTACTATTTGATGATAATCCCTTGTCTAAAATTGGTGTGAGATTTGATAAACTCATACCTGATGGAGTTGATCTGGGAGGTGCTTGTGAGGGAGGACAAGGATTTTTCTGCAATGTCACTGATCTTCGATTGGAAAACAGTGGTGTGGAAGAACTGGACAAATCACTTATTAATGCACTGTTTGAGGTTGTTTGCAGTGAGAGCAGAAGTACACCATTCATTTTGTTCATGAAAGATGCTGAGAAGTCTATAGTTGGAAATGGAGATCCATCTTCATTTAAAAGTAGGCTTGAAAACCTTCCAGACAATGTGGTGGTAATAGGTTCACACACTCATACTGACAGTCGCAAGGAGAAGTCACATCCTGGTGGTTTGCTTTTTACAAAATTTGGTGGAAATCAGACTGCCCTTCTTGACTTGGCGTTCCCAGATAGTTTTGGACGATTGCATGACAGGGGGAAGGAAGCCCAAAAGCCAAACAAAACGTTGACTAAGCTTTTCCCAAATAAAATTACAATTCACATGCCACAGGATGAGGCACTTCTACCATCTTGGAAGCAGCAACTGGATCGAGATGTTGAGACTCTTAAAATCAAAGGAAATTTACATCAATTGAGCACGGTTTTGGGTCGTTGTGGAATGGAATGTAAAGGACTGGAGACCTTGTGCATTAAGGATCAGACACTCACAAATGAAAATGCAGAGAAGATAGTTGGTTGGGCTGTAAGCCACCACCTCATGCAGAACTCTGAAGCTGATCCTAATTCAAAGCTTGTATTATCGTGTGAGAGCATCGAGTATGGAATTGGGATCTTGCAGTCTATCCAGAATGAGTCCAAGAACCTGAAGAAGTCTCTTAAGGATGTTGTAACAGAAAATGAGTTTGAAAAGAGGCTTTTGGGTGATGTGATTCCACCAAGTGACATTGATGTTACTTTTGATGATATTGGTGCTCTTGAAAATGTCAAGGATACACTGAAGGAGTTGGTGATGCTTCCTTTACAGAGGCCTGAGCTTTTTTGCAAGGGGCAACTAACCAAGGTTCTTTGTCAAAATATTATCCATTCTGATTTCACACTTGAGTTACCTTTTGTGCAGCCTTGCAAGGGTATCCTATTATTTGGTCCCCCTGGAACAGGTAAAACAATGCTTGCAAAGGCAGTTGCTACTGAAGCTGGTGCAAACTTCATCAACATTTCTATGTCAAGCATTACATCTAAGGTTAAATTTGTGCCTGACTGGTGGTTTGGTGAGGGTGAGAAATACGTCAAAGCTGTTTTTTCTCTGGCGAGTAAAATTGCTCCTAGTGTTATATTTGTTGACGAAGTTGACAGCATGCTGGGTCGGAGGGAAAATCCAGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTTATGGTGAACTGGGATGGCTTACGGACAAAGGATACTGAGCGAGTTCTTGTGCTTGCAGTCACTAACAGGCCTTTTGACCTAGATGAGGCTGTCATAAGGAGGCTGCCACGAAGATTGATGGTAAATTTGCCAGATGCTCCAAATAGAGCGAAAATATTGAAAGTTATTCTGGCAAAAGAGGAATTGTCTCCTGATGTTGATTTGAATGCAGTTGCAAATATGACTGATGGATATTCTGGAAGTGATCTTAAGAACTTGTGTGTAACTGCTGCACATCGTCCAATTAAAGAGATATTAGAAAAGGAAAAAAAGGAACGTTCTGCTGCTACAGCAGAAGGTCGACCTCCCCCAGCATTATGTGGCAGTGGGGACGTTCGATCTTTAAACATGGAAGACTTTAAATATGCACATAAACAGGTATCTGCAAGTGTTTCATCTGAATCAGTAAATATGACTGAGCTTTTACAATGGAATGAACTGTATGGCGAGGGTGGTTCAAGAATAAAGAAAGCACTCAGCTATTTCATGTGA	3651	0.4284	MVSTRRSGSLSSNKRSSSSSDDKSPSPKRHKVDNGGSSEKPSPASENSKEFCTPEPVPDPGECGSGDPPIAGVDATDAVSPPKGDADAKPAVPVTTPVADATCRSFSSWAMYQAQNTKYEASAAPWCRFLSQTAQNPNVAVRTPNFTIGSSRNCNFPLKDQTISGNLCKIRHTQHGESSVAVLDSTGSKGSVLVNGTLIKKNNSCVLNSGDEIFQQLNNEVVVRGAEVQSSVKKYLQVERRSGDSSAVAGASILASLSNLRQDLPKWKSPSKTLVPNVQSDKAADIGASNKSSMMDCDLEAGTKAGNVKLSGVNDFLSPFFRILARSNCKLKLSKSICKQVLEERNGMWDMQAALTSGTSVRCAVFKEDVHDAILDGKEMDVSFDNFPYYLSENTKNVLVAACFIHLKHKKHEKYTADLTTINPRILLSGPAGSEIYQEMLVTALANYFGAKLLIFDSYILLGGLYSKEVELLKDGFNAEKSCSRTKQSPTVPDMARSMDPLANETETPSSTLNGLESQPKLDNDTDNIPSTSGTAKNCSFKLGDRVKFNSSSSCGLHQTSSRGPPNGSRGKVVLLFDDNPLSKIGVRFDKLIPDGVDLGGACEGGQGFFCNVTDLRLENSGVEELDKSLINALFEVVCSESRSTPFILFMKDAEKSIVGNGDPSSFKSRLENLPDNVVVIGSHTHTDSRKEKSHPGGLLFTKFGGNQTALLDLAFPDSFGRLHDRGKEAQKPNKTLTKLFPNKITIHMPQDEALLPSWKQQLDRDVETLKIKGNLHQLSTVLGRCGMECKGLETLCIKDQTLTNENAEKIVGWAVSHHLMQNSEADPNSKLVLSCESIEYGIGILQSIQNESKNLKKSLKDVVTENEFEKRLLGDVIPPSDIDVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKVLCQNIIHSDFTLELPFVQPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKVKFVPDWWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAVTNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEELSPDVDLNAVANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERSAATAEGRPPPALCGSGDVRSLNMEDFKYAHKQVSASVSSESVNMTELLQWNELYGEGGSRIKKALSYFM	1216

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi177g00084	1216	SMART	AAA_5	941	1085	IPR003593	GO:0016887
	Sebi177g00084	1216	MobiDBLite	consensus disorder prediction	1	20	-	-
	Sebi177g00084	1216	Gene3D	-	1084	1178	-	-
	Sebi177g00084	1216	MobiDBLite	consensus disorder prediction	483	533	-	-
	Sebi177g00084	1216	Pfam	ATPase family associated with various cellular activities (AAA)	945	1081	IPR003959	GO:0005524\|GO:0016887
	Sebi177g00084	1216	Gene3D	-	884	1191	IPR027417	-
	Sebi177g00084	1216	ProSiteProfiles	Forkhead-associated (FHA) domain profile.	146	199	IPR000253	GO:0005515
	Sebi177g00084	1216	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	884	1191	IPR027417	-
	Sebi177g00084	1216	Gene3D	-	125	230	-	-
	Sebi177g00084	1216	Pfam	AAA+ lid domain	1105	1140	IPR041569	-
	Sebi177g00084	1216	MobiDBLite	consensus disorder prediction	21	36	-	-
	Sebi177g00084	1216	Pfam	FHA domain	147	213	IPR000253	GO:0005515
	Sebi177g00084	1216	MobiDBLite	consensus disorder prediction	1139	1164	-	-
	Sebi177g00084	1216	PANTHER	AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED	366	1215	-	-
	Sebi177g00084	1216	MobiDBLite	consensus disorder prediction	503	533	-	-
	Sebi177g00084	1216	Coils	Coil	846	866	-	-
	Sebi177g00084	1216	SUPERFAMILY	SMAD/FHA domain	124	213	IPR008984	GO:0005515
	Sebi177g00084	1216	MobiDBLite	consensus disorder prediction	1	92	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi177g00084	Sebi-Chr177	1472679	1485026	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi177g00084	885	1143	Calmodulin-binding Proteins	AT3G56690	36.122	5.08e-35	143

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi177g00084	-		-	gmx:100816731	1903.26