Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi177g00078 ATGGATGATGTAATGGAGGCTCTCTCCGGTGCGCATTTCTCCGGTTGGCATCCTTCAACGACGTCGTCTTCTTCTCCAATGCCAGCACCTTCTCATTCCCCTTTCGTGATCGGGGTCTCTGGTGGTACGGCATCAGGGAAAACCACGGTGTGTGACTTGATCATTCAACAACTGCAAGATCACAGAGTTGTGCTCGTTAGTCAGGATTCTTTCTACCGTGGATTGACAAATGATGAGTTGAAACGCGTTCATGAGTATAATTTTGATCATCCTGATGCATTTGATACAGAGCAACTTGTAGAAACCCTCAGCAAGCTCAAATCTGGACAGTCAGTTCAGGTTCCAATATATGATTTTAAGCTCCACCAGAGATCTTCTGACAGATTCCGACAGGTCAATGCATCTGAGGTAATCATTCTAGAGGGTATATTGGTTTTTCATGAACAACGTGTTCGCAACATGATGAACATGAAGATATTTGTCGATGCAGATCCTGATGTAAGGCTTGCCCGCAGAATAAGACGTGATACTGTTGAGAGGGGTAGAGATGTACACTCTGTGCTGGAACAGTACGCAAAATTTGTTAAGCCTGCCTTCGATGATTTTATTCTTCCATCCAAAAAGTATGCTGATGTCATAATACCTCGTGGGGGAGAGAATCGTGTAGCAATTGACTTGATAGTTCAACATATCCGCACTAAGCTAGGCCAACATAACCTTTGTAAGATATATCCAAATTTGAATGTTATACAGTCTACTTTCCAGACTAGAGGCATGCACACTCTTATTCGTGACAGAGAAATATCAAAGCATGACTTTGTTTTTTATTCAGATCGGCTAATTCGTTTGGTAGTGGAACATGGTCTTGGTTACTTGCCATTTACAGAGAAACAAGTTATCACACCTACAGGATCAATCTATACTGGAGTTGACTTTTGTAAGAAATTGTGCGGAGTATCCGTCATTCGTAGTGGTGAAAGTATGGAAAATGCTTTGCGTGCATGTTGTAAAGGAATAAAAATAGGAAAAATTCTCATCCACCGCGAAGGGGATGAAACCCAGCTTATTTATGAGAAGCTTCCAAAAGATATTTCGGAGAGACATGTTCTTCTCATGGACCCAGTACTTGGTACAGGTAACTCTGCCAGCCAAGCAATCGAGCTCCTTATAAAAAGGGAGTTCCAGAGTCCCGGATAA 1197 0.4227 MDDVMEALSGAHFSGWHPSTTSSSSPMPAPSHSPFVIGVSGGTASGKTTVCDLIIQQLQDHRVVLVSQDSFYRGLTNDELKRVHEYNFDHPDAFDTEQLVETLSKLKSGQSVQVPIYDFKLHQRSSDRFRQVNASEVIILEGILVFHEQRVRNMMNMKIFVDADPDVRLARRIRRDTVERGRDVHSVLEQYAKFVKPAFDDFILPSKKYADVIIPRGGENRVAIDLIVQHIRTKLGQHNLCKIYPNLNVIQSTFQTRGMHTLIRDREISKHDFVFYSDRLIRLVVEHGLGYLPFTEKQVITPTGSIYTGVDFCKKLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDETQLIYEKLPKDISERHVLLMDPVLGTGNSASQAIELLIKREFQSPG 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi177g00078 398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 227 IPR027417 -
Sebi177g00078 398 Pfam Phosphoribulokinase / Uridine kinase family 36 222 IPR006083 GO:0005524|GO:0016301
Sebi177g00078 398 CDD UMPK 36 234 IPR000764 -
Sebi177g00078 398 Pfam Uracil phosphoribosyltransferase 252 395 - -
Sebi177g00078 398 MobiDBLite consensus disorder prediction 15 30 - -
Sebi177g00078 398 NCBIfam uridine kinase 34 234 IPR000764 -
Sebi177g00078 398 ProSiteProfiles UvrC family, homology region profile. 122 223 IPR001162 GO:0009381
Sebi177g00078 398 PANTHER URIDINE KINASE 27 363 - -
Sebi177g00078 398 CDD PRTases_typeI 311 392 IPR000836 -
Sebi177g00078 398 FunFam Uridine kinase 31 237 - -
Sebi177g00078 398 Gene3D - 31 237 IPR027417 -
Sebi177g00078 398 MobiDBLite consensus disorder prediction 15 34 - -
Sebi177g00078 398 SUPERFAMILY PRTase-like 237 394 IPR029057 -
Sebi177g00078 398 FunFam Probable uracil phosphoribosyltransferase 237 397 - -
Sebi177g00078 398 PRINTS Uridine kinase signature 64 75 - -
Sebi177g00078 398 PRINTS Uridine kinase signature 166 176 - -
Sebi177g00078 398 PRINTS Uridine kinase signature 180 191 - -
Sebi177g00078 398 PRINTS Uridine kinase signature 34 51 - -
Sebi177g00078 398 PRINTS Uridine kinase signature 202 215 - -
Sebi177g00078 398 PRINTS Uridine kinase signature 109 124 - -
Sebi177g00078 398 Gene3D - 238 396 IPR029057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi177g00078 Sebi-Chr177 1444138 1449533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi177g00078 1 392 PRT Gene Family AT3G27190 76.087 0.0 644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi177g00078 K00876 - gmx:100816209 716.072