LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi177g00072	ATGACAAGCAATAATGGAAAGGGTCCTACTTGTGCTTGTCAATCCCATGGCGGCAGGGCGAAAGAGTACTTTGAGGAGCAGGGAATCTTACAATATAATTCCATCAAGGAATTTGATCACTGTAAGAATGTTTCTGCTGGCGTGGAAGTGGATGGTTTTCTTGGTGGAAAAGAGGAGAGAGAGGAAGGTGAGATCTTTGTTGAACATGGGGAATATGCACATGACCCAGGGTTTCAAGCTGTTGATGGGAAGGAAACTTTGCCACCGCCAGAGAAGAGGAGAAAAATTTCTCCAATTGTGTGGGAGCTGGGAGAGAAGGAAGGAAGAAACTCTTCAAAAAGTAGGGTCAGACAGGTTACTGCAGTGTCCCAATTCCATCCATCCCTACCAAACATTCCTGGTGCCCATGGTGTCTTAAGTGGTTCTTCACCAAATTCCTCTTGTGTGTTGCCTCAAGAACATTCGCAGGACTGTAACCAATATGTGGATGGAAAAAAAGATGTGCAAGGATGGAACATCACTATGTCAAGATGGGCTTGTGATGGTCTTTCACCAACAGGCACTGATGATAAATACAAGCAAGTCACAGGAACCTCAAGTTCTGAAGTTGATGAATCCCAAAGAGAATGTCCAGAGAGCACAATTACTAGATCATCAGGATCAGGAAGCAGCAGAAATTGTTCCCTGGGACTTTCTACTGAAGATACTGATTTTGACTCCAGTGATGATGTTGAGGAAAGTGATTCGCCATCTTCTCATAGAGATGGTGGTTCAATGTATCCGCAGAGAAATATAAACATGCTTCAGAGCTGCAGAAGTGTACACGATTTTGAAATGATTAAAAAAATAAACGAAGGAACTTATGGTGTTGTCTATAAAGCCAAGGATAAGAAGACTGGAGAAATAGTAGCATTGAAAAAGGTGAAGATGAACATAGAGAGGGATGGTTTTCCAATGTCATCCTTAAGGGAAATAAACATTCTATTGTCTTTCAATCATCCCTTTATTGTGGATGTTAAGGAAGTAGTTGTGGATAATTATGATGGAACTTTCATGGTAATGGAGTACATGGAGCATGACTTGAAGGGACTTATGGAGCTTAAAAAACAACCTTTTAGTATAGGTGAAGTAAAATATATGGTGCTTCAACTTCTTGAAGGTGTCAAGTATCTTCATGATAATTGGATTCTCCATAGGGACTTGAAGACATCAAATATTCTACTAAACAACAAAGGAGAGCTGAAAATATGTGACTTTGGGTTGTCAAGGCAGTATGGAAGCCCATTGAAGCCATATACTCCTGTTGTGGTTACACTGTGGTATAGAGCACCTGAACTTTTATTAGTTGCCAAGGAGCCTCTGTTCAGGGGTAAAACCGAAATTGAACAACTTCATAAGATTTTTCAAACCCTGGGTACACCAGATGAGAAAATTTGGCCAGGATTATCTAAATTACCGGGGTCTAAAACAAATTTTGTTAAGCAACCGTATAATATGCTAAGGAAGAAGTTTCCAGCTGCATCTTTCACTGGTTCACCAGTTTTATCTGAGTTGGGCTTTGACTTGATGAAGAAGCTTCTAACTTACGACCCTGAAAAGAGGATAACTGCAGAAGATGCTCTCCTTCATGATTGGTTCCGTGAAGCTCCACTTCCCAAATCTGATTTCAAGCCTGTTTTTTCTTGGCAGTGA	1692	0.4078	MTSNNGKGPTCACQSHGGRAKEYFEEQGILQYNSIKEFDHCKNVSAGVEVDGFLGGKEEREEGEIFVEHGEYAHDPGFQAVDGKETLPPPEKRRKISPIVWELGEKEGRNSSKSRVRQVTAVSQFHPSLPNIPGAHGVLSGSSPNSSCVLPQEHSQDCNQYVDGKKDVQGWNITMSRWACDGLSPTGTDDKYKQVTGTSSSEVDESQRECPESTITRSSGSGSSRNCSLGLSTEDTDFDSSDDVEESDSPSSHRDGGSMYPQRNINMLQSCRSVHDFEMIKKINEGTYGVVYKAKDKKTGEIVALKKVKMNIERDGFPMSSLREINILLSFNHPFIVDVKEVVVDNYDGTFMVMEYMEHDLKGLMELKKQPFSIGEVKYMVLQLLEGVKYLHDNWILHRDLKTSNILLNNKGELKICDFGLSRQYGSPLKPYTPVVVTLWYRAPELLLVAKEPLFRGKTEIEQLHKIFQTLGTPDEKIWPGLSKLPGSKTNFVKQPYNMLRKKFPAASFTGSPVLSELGFDLMKKLLTYDPEKRITAEDALLHDWFREAPLPKSDFKPVFSWQ	563

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi177g00072	563	Gene3D	Phosphorylase Kinase; domain 1	261	358	-	-
	Sebi177g00072	563	FunFam	cyclin-dependent kinase G-2 isoform X1	262	358	-	-
	Sebi177g00072	563	MobiDBLite	consensus disorder prediction	138	155	-	-
	Sebi177g00072	563	CDD	STKc_CDC2L1	271	546	IPR045267	GO:0004674\|GO:0005524\|GO:0006468
	Sebi177g00072	563	MobiDBLite	consensus disorder prediction	179	262	-	-
	Sebi177g00072	563	MobiDBLite	consensus disorder prediction	189	204	-	-
	Sebi177g00072	563	ProSiteProfiles	Protein kinase domain profile.	277	546	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi177g00072	563	Pfam	Protein kinase domain	277	546	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi177g00072	563	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	396	408	IPR008271	GO:0004672\|GO:0006468
	Sebi177g00072	563	SMART	serkin_6	277	546	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi177g00072	563	MobiDBLite	consensus disorder prediction	212	235	-	-
	Sebi177g00072	563	SUPERFAMILY	Protein kinase-like (PK-like)	270	552	IPR011009	-
	Sebi177g00072	563	Gene3D	Transferase(Phosphotransferase) domain 1	359	449	-	-
	Sebi177g00072	563	Gene3D	Transferase(Phosphotransferase) domain 1	450	546	-	-
	Sebi177g00072	563	PANTHER	CELL DIVISION PROTEIN KINASE	448	552	-	-
	Sebi177g00072	563	MobiDBLite	consensus disorder prediction	127	155	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi177g00072	Sebi-Chr177	1358276	1361370	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi177g00072	272	552	Core Cell Cycle Gene Families	AT5G10270	41.509	5.50e-69	229

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-PITSLRE	Sebi177g00072		Pkinase	7e-56	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi177g00072	K08818		-	gmx:100788840	644.039