Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi177g00052 ATGGCGGGTTCGGAGGAGGTTTTCCCGTGGTTGAAATCTCTGCCGGTGGCGCCGGAGTACCGGCCGAGCGCGGCGGAGTTCCAAGATCCGATCGGTTACATTTTAAGATCGAGAAAGAAGCATCAAAATACGGAATCTCAACAGATCGGGTTCTGCCCTCGGCGACCCCAACCGGTTCGGCGACCGGTCTGGCACAGCGGTCACCACTACTCATTTCGCGACTTCGAGGCCAAAGCCAAAGCGTTCGAGAAAAGCTACCTCAAGAAAGGTAAAAAGTGCGCTTCAACGGTTTCCCCTCTCGAAGTGGAGACTCTGTATTGGAAGGCCACCGCTGATAAGCCCTTTTCCGTTGAGTATGCAAACGACATGCCAGGCTCTGCGTTTGTTCCTGCAAACGACGGAGGAGGAGGTGGAGACAACGTAACGGTTGGCGAGACTGCGTGGAATATGAGAGCGGTTTCGAGGGCAAATGGTTCTCTGTTGAGGTTCATGAAAGAGGAGATTCCTGGAGTGACTTCACCTATGGTGTATGTTGCTATGTTATTCAGCTGGTTCGCTTGGCATGTGGAGGACCATGACTTGCATAGCTTGAATTACCTTCACATGGGTGCTCCAAAGACATGGTATGGTGTGCCTAGAGACGCAGCCGTTGCATTCGAGGAAGTTGTTAGAGTTCATGGCTATGGAGGAGAGATTAACCCTCTTGTTACTTTTGCTATTCTTGGTGAGAAAACTACAGTGATGTCGCCAGAAGTATTCATTAGCGCGGGTGTTCCCTGCTGCAGATTAGTGCAAAATGCTGGGGAATTTGTGGTGACGTTTCCGAGAGCATATCACACAGGATTTAGTCACGGTTTTAATTGTGGAGAGGCAGCTAACATTGCAACACCTGAATGGTTGAGGGTTGCTAAAGATGCTGCTATTCGGAGGGCTTCAATTAATTATCCTCCTATGGTTTCACATTTCCAGTTACTTTATGACCTTGGCCTTGCTTTGTGTTCTAGAATCCCTGGAGGCATGAGCACTGAACCACGGAGTTCTCGACTTAAAGATAAGAGAAAGGGTGTAGGAGAAACTGTAATTAAAGAACTATTTGTACAGGACGTGTTACGGAATAATGATCTGCTTCACGTACTTGGCAAAGGATCTGCTATAGTACTTCTTCCTCGTAGCTCTTCTGACATTTCTGTTTGCTCAAAATTACGTGTTGGGTCTCAACAACTAAAAGTGAACACTGAGTTTTCTCTCAATGAATGCAATTCTGAGGGAATGAATTCCTCAAAAGGTTTTATTTCTGATGACCTGGTGTTCAACAGGAACCATGGAATAAAAAAACCTAGAGAACCAGCATCTAGATACCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGACCGTTGGTTCTGGAGTAACTAGCAATAAATTTACTGTTGCCCATGAAGATGCAAGTATTCCCAAGCCCAGCACATATACAGGCAGTTCTATCAGTTCTGGATGGACAAAACAGAATGCTGGAAATGATGTGTATGATGCTCCTGTTGAATCTATTGAACAACAGACACAGATTGCTGATCATAATTCCAAGGAGGCTTTAAATACTGAAAGAAAAAAAGGCAATACAGCTCTTGCACTATTGGCTTCAGCATATGGAAATTCTTCCGACTCTGAGGAAGATCAGGGTGACTCAGATATTGCAGCTGACGGTGGTGAATTGAATGTGATGAAGCATCCATCAGCAAGTAGATCTCAGGAGATACCTTGTTTGCCTTCTCATTTTCAAGATTACCATGGTAGTCCCATGGTTAGACTTGATGGAGGAGATGATAATCCTTCGGAGAGTATTGGCAATTATGAGTATTATATGCATAAGAGAGTTGAGCGCATTATGAGCCCGTTTGACTACTCTGTTAAGTCAGAAGATTGTAACATCACTTCAGGGGGAGCATTTAAAAATAATAGGGCAGTACCTTATTCCACCATGAATTGTTCTCAAGATACTCATGCTGCAACGTCATTAATGGGCAAAACTGCGATTCCCATTGATAATAAAAATGTTTCATTGGGGGCACCATCTGATGAAGACTCGTCTAGAATGCATGTCTTCTGTCTAGAGCACGCTGCAGAAGCAGAGCAGCAACTTCGTCCAATTGGAGGTGCCCACATATTGCTCCTATGTCATCCAGATTATCCGAAGATAGAGGCTGAAGCAAAGTTTGTGGCAGAAGAATTGGGGATTGATTACATGTGGAAGAATACTGTATACAGGCATGCCAACAGGGAAGACGAGGAGAGGATCCAATCATCTCTGGATGGTGAGGAAGCTATTCCTGGGAATGGGGACTGGGCTGTGAAGCTGGGAATCAATCTCTTTTATAGTGCCAATCTTAGCCGCTCTCCACTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATATAATGCGTTTGGTCGTAGCACTCCATCAAGCTCTCCCATAGAACCCAAGGTCTATCGGAGAAGGGCTAACAAACAGAAAAAGGTAGTTGCTGGGAAATGGTGCGGCAAAGTTTGGATGTCCAATCAAGTCCATCCCCTTTTAGCAAAAAGAGATTCTGAAGATGTTGAGGATGAGAAAAGCTTACATGGGTGGTCATTACCTGATGAGAAACTTGAGAGATCAGAAATTACCCACAAAAGCAATACTACAATTAAAAAATTTGGTAGGAAAAGGAAAATGACTGTGGAGAGTGGAGAAGCCAGGGAAGGAAGTATTGCTGAGAGAGATTGGCTATCAGATGATTCAATTGAAGATAAATCCAATCAATCTCGAAGGAAGATTCTTCGAAGTAAGCGAACTAGGCCTATTGAGAGAGATGATACTGCTTCAGAAGGGGATTATTCTCCTCTGCAGCATCATAGAAAGCCTATAAGCAAGCGTGCAAAATGCATTGAAAGTGATGCAGTTTCAGATGATTCACTGGATGATAATACTCATATACAGCATTGGAGGAAGGCTAATGCCAAGGAAGCTAAATTTATTGACAGTGATGTGGTTTCAGATGACACAATGGACTATGATTTTGATTGGGCACAGAGGGGAGAGCTTAGCGACAAGCAAGATGTTATTTCAGAAGACTCATTGGGTGTTGGTTCTCTTCAGCTGCAAAGAAAAACTCCTAAAAGCAAGTATGATCAATACATTGCCGAAGAAGATGTGATTTCTAATGATGAAACAGAAGTTTATTTTCAGAAGCAGAAAGGGAGGATATCTAAAAGTAGGCATCACAAATTCCTTTCTGAAAAAGAGACAGTGATATCTGATGACCAACTGGAGCACCACATGCAGAAGCAGCAACGGAGACATCCTAAAAGCAGGCAAGACAAATACCTTTCTGGAGAGGATATTATATCTGATGATCAACTGGAGGGTCATTGTCGCAAGTATCAAAGAAGGATTCCTAAAAGCAGGCAAGCCAAATGTGTTACTGGGGAAGATGTAGTGTCTGATGACCAGTTGGATGATCACTTTCAGAAGCCCCAAAGGAATGTTCGAAGGAGCAGGCAAAATAAATACAATGATAGAGAAGTTGTGGATGACTCAACTGAAAATAATTCTCATCTGTTGTACAGAACTCCTAAAAGAAAGCAAGCTAAATGCATGGATGAAGACCCTGTAAGTTCAGATGATCAAGTAGAGGATGATTCTCATCAGCAACATGGGAGAACTCTTCGAAGTAAGCAATCTAAACCACAACCACAGACTCTTAAACATATGAAACAAGCTAACCCTCTCCATGTGAGAAGCATGACATCCCGGCCTGTGAAACGAGGTGCTCTCATGCTAATGAAATCAAAGGCTCCTCGGCAAATGAAGCAGCAGCCTCGTGTATGGAATAGTCAATCTGGTAACTCCAGAGACGAGACTTTACATATTGAAGAGGAGGAAGAAGGTGGACCTAGCACAAGGCTTAGGAAGAGAGTTCCAAAAATTCAGAAGGAATCTGAAGGAAAATCAAAAGAGAAGGAAACCAAAAAGAAAAAAGTGAAGAATGCCACAGCTGCAAAGGTTTCAGCTGGCCAGGCCAAAGTGAAGGATGAGGAAGGTGAATACCAGTGTGATATTGAGGGGTGTAACATGAGTTTTGGGTCTAAACAGGAGCTGGTGCATCATAAGAGAAATATCTGTCCTGTGAAAGGATGTGGAAAGAAATTTTTCTCACACAAATATCTGGTGCAGCACCGTCGAGTTCATGAGGATGACCGTCCCCTGAAGTGCCCTTGGAAGGGGTGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACTGAACATATTCGAGTCCACACTGGTGCTCGTCCATATGTATGTGCTGAGGCAGGGTGTGGGCAAACCTTCAGATTTGTTTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTCAGCAAAGAAGAATCGTTGA 4440 0.4365 MAGSEEVFPWLKSLPVAPEYRPSAAEFQDPIGYILRSRKKHQNTESQQIGFCPRRPQPVRRPVWHSGHHYSFRDFEAKAKAFEKSYLKKGKKCASTVSPLEVETLYWKATADKPFSVEYANDMPGSAFVPANDGGGGGDNVTVGETAWNMRAVSRANGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAPKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLGLALCSRIPGGMSTEPRSSRLKDKRKGVGETVIKELFVQDVLRNNDLLHVLGKGSAIVLLPRSSSDISVCSKLRVGSQQLKVNTEFSLNECNSEGMNSSKGFISDDLVFNRNHGIKKPREPASRYLMSADCSFFNDWTVGSGVTSNKFTVAHEDASIPKPSTYTGSSISSGWTKQNAGNDVYDAPVESIEQQTQIADHNSKEALNTERKKGNTALALLASAYGNSSDSEEDQGDSDIAADGGELNVMKHPSASRSQEIPCLPSHFQDYHGSPMVRLDGGDDNPSESIGNYEYYMHKRVERIMSPFDYSVKSEDCNITSGGAFKNNRAVPYSTMNCSQDTHAATSLMGKTAIPIDNKNVSLGAPSDEDSSRMHVFCLEHAAEAEQQLRPIGGAHILLLCHPDYPKIEAEAKFVAEELGIDYMWKNTVYRHANREDEERIQSSLDGEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYNAFGRSTPSSSPIEPKVYRRRANKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDVEDEKSLHGWSLPDEKLERSEITHKSNTTIKKFGRKRKMTVESGEAREGSIAERDWLSDDSIEDKSNQSRRKILRSKRTRPIERDDTASEGDYSPLQHHRKPISKRAKCIESDAVSDDSLDDNTHIQHWRKANAKEAKFIDSDVVSDDTMDYDFDWAQRGELSDKQDVISEDSLGVGSLQLQRKTPKSKYDQYIAEEDVISNDETEVYFQKQKGRISKSRHHKFLSEKETVISDDQLEHHMQKQQRRHPKSRQDKYLSGEDIISDDQLEGHCRKYQRRIPKSRQAKCVTGEDVVSDDQLDDHFQKPQRNVRRSRQNKYNDREVVDDSTENNSHLLYRTPKRKQAKCMDEDPVSSDDQVEDDSHQQHGRTLRSKQSKPQPQTLKHMKQANPLHVRSMTSRPVKRGALMLMKSKAPRQMKQQPRVWNSQSGNSRDETLHIEEEEEGGPSTRLRKRVPKIQKESEGKSKEKETKKKKVKNATAAKVSAGQAKVKDEEGEYQCDIEGCNMSFGSKQELVHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEAGCGQTFRFVSDFSRHKRKTGHSAKKNR 1479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi177g00052 1479 SMART c2h2final6 1447 1473 IPR013087 -
Sebi177g00052 1479 SMART c2h2final6 1364 1386 IPR013087 -
Sebi177g00052 1479 SMART c2h2final6 1387 1411 IPR013087 -
Sebi177g00052 1479 SMART c2h2final6 1417 1441 IPR013087 -
Sebi177g00052 1479 ProSiteProfiles Zinc finger C2H2 type domain profile. 1387 1416 IPR013087 -
Sebi177g00052 1479 MobiDBLite consensus disorder prediction 1100 1129 - -
Sebi177g00052 1479 SUPERFAMILY Clavaminate synthase-like 157 311 - -
Sebi177g00052 1479 MobiDBLite consensus disorder prediction 1165 1345 - -
Sebi177g00052 1479 MobiDBLite consensus disorder prediction 1208 1235 - -
Sebi177g00052 1479 SUPERFAMILY beta-beta-alpha zinc fingers 1435 1469 IPR036236 -
Sebi177g00052 1479 ProSiteProfiles Zinc finger C2H2 type domain profile. 1417 1446 IPR013087 -
Sebi177g00052 1479 MobiDBLite consensus disorder prediction 945 966 - -
Sebi177g00052 1479 FunFam Probable lysine-specific demethylase ELF6 1444 1473 - -
Sebi177g00052 1479 ProSitePatterns Zinc finger C2H2 type domain signature. 1389 1411 IPR013087 -
Sebi177g00052 1479 Pfam JmjC domain, hydroxylase 175 293 IPR003347 -
Sebi177g00052 1479 MobiDBLite consensus disorder prediction 1285 1299 - -
Sebi177g00052 1479 FunFam Probable lysine-specific demethylase ELF6 1414 1443 - -
Sebi177g00052 1479 SUPERFAMILY beta-beta-alpha zinc fingers 1403 1445 IPR036236 -
Sebi177g00052 1479 ProSitePatterns Zinc finger C2H2 type domain signature. 1449 1473 IPR013087 -
Sebi177g00052 1479 PANTHER LYSINE-SPECIFIC DEMETHYLASE 9 1413 - -
Sebi177g00052 1479 ProSiteProfiles Zinc finger C2H2 type domain profile. 1447 1478 IPR013087 -
Sebi177g00052 1479 SMART cupin_9 142 311 IPR003347 -
Sebi177g00052 1479 MobiDBLite consensus disorder prediction 550 570 - -
Sebi177g00052 1479 Gene3D Classic Zinc Finger 1385 1471 - -
Sebi177g00052 1479 MobiDBLite consensus disorder prediction 1165 1195 - -
Sebi177g00052 1479 ProSiteProfiles JmjC domain profile. 145 311 IPR003347 -
Sebi177g00052 1479 MobiDBLite consensus disorder prediction 1238 1252 - -
Sebi177g00052 1479 Gene3D Cupin 10 315 - -
Sebi177g00052 1479 MobiDBLite consensus disorder prediction 934 972 - -
Sebi177g00052 1479 MobiDBLite consensus disorder prediction 1300 1343 - -
Sebi177g00052 1479 ProSitePatterns Zinc finger C2H2 type domain signature. 1419 1441 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi177g00052 Sebi-Chr177 1001156 1010015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi177g00052 698 799 C2H2 Transcription Factor Family AT5G04240 33.333 6.81e-14 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi177g00052 JmjC 2.7e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi177g00052 - - gmx:100775271 1899.79