Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi177g00050 ATGGCATCGGGTGAGGGATTTCTGACAGATGGGCAGAGGGAAATGCTAAAAATTGCTAGTCAAAATGCCGAGAATTTGTCTTCATCGCCGAAATCCCCGTCGTCTTTGCTTTCTGAACATCATATAAAAGCCCCTGCTGGTGGTAAGGCACATACCGCTGGGATAGCTGTGAGGCATGTGCGCCGGTCACACTCAGGAAAGTTTGTGCGGGTGAAGAAGGATGGCGCTGGTGGTAAGGGCACTTGGGGAAAATTGCTTGATACAGATGTTGAATCTCACATAGACCGAAATGATCCAAATTATGACAGTGGCGAGGAACCGTATCAGCTGGTTGGATCTACTGTCACTGACCCCTTAGACGAATTCAAGAAAGCAGTGGTATCTATCATAGAGGAATATTTCAGTAATGGGGATGTGGAATTGGCAGCATCTGACCTCAGAGAACTTGGCTCAAGTGAATATTATCCATACTTCATTAAGCGCCTTGTGTCCATGGCAATGGACAGGCATGATAAGGAGAAAGAAATGGCTTCTGTTCTGCTTTCAGCATTGTATGCTGATGTTATTAGTCCATCACAGATTAGGGACGGATTTTTTATGCTTCTTGAATCTGCCGATGATCTTGCAGTAGATATACTGGATGCAGTGGATATCCTTGCTTTATTCCTGGCACGTGCTGTTGTTGATGACATTCTTCCTCCAGCTTTTCTTGCCAGGGCACGGAAGGCTCTTCCAGAATCTTCCAATGGAGTTCAGGTAATCCAGACTGCTGAGAAGAGTTATCTCTCAGCTCCACATCATGCTGAACTTGTGGAAAGGCGATGGGGTGGTAGCACTCACATCACTGTTGAAGAAGTGAAGAAGAAGATTGCTGATTTACTTAGAGAATATGTGGATAGTGGTGATGCATTTGAAGCCTGTAGGTGCATACGTGAATTGGGGGTTTCATTCTTTCATCATGAGGTTGTGAAGAGGGCTTTGGTACTTGCCATGGAGATTCGTTCGGCAGAACCTCTAATGTTGAAGCTATTGAAAGAAGCAGCAGAAGAAGGACTCATTAGTTCTAGTCAAATGGTGAAAGGGTTTTCTCGTTTGGCAGAAGGGCTAGATGATCTTGCTCTTGATATTCCATCAGCTAAAGCCTTGTTTGAGTCATTTGTCCCAAAGGCAATATCTGAAGGATGGCTTGATGCTTCTTCATTGACCAAACCTGCTGGTGAAGATGGGGAAATCCAAGTTGAAGATGAGAGGGTGAGGAAGTACAAAAAGGAAGCTGTAACTATAATTCATGAGTATTTTCTCTCTGATGACATTCCTGAACTCATCCGGAGTCTTGAAGATCTTGGAGCACCTGAGTATAACTCAATATTTTTGAAGAAGCTAATAACTCTTGCCATGGACAGAAAGAACAGAGAAAAAGAAATGGCATCTGTACTGCTATCTGCTCTTCATATAGAGATCTTCTCTACAGAGGACATAGTTAATGGTTTTGTCATGCTTCTGGAAAGTGCAGAAGATACAGCACTGGATATATTGGATGCTTCAAATGAGCTTGCTCTTTTCTTAGCACGGGCTGTGATTGATGATGTATTGGTCCCGTTGAATTTGGAAGAAATTGGCAGCAGGTTACCACCAAATTGTAGCGGTAGTGAAACTGTGCGTATGGCTCGATCACTCATTGCTGCTCGTCATGCTGGGGAAAGGCTATTGAGATGCTGGGGTGGAGGGACTGGATGGGCTGTGGAAGATGCTAAGGACAAGATCATGAAGCTCTTGGAGGAGTACGAAAGTGGTGGGGTTGTGAGTGAAGCATGTCAGTGTATTCGTGACCTGGATTTGCCTTTCTTTAACCATGAGGTGGTGAAGAAAGCTTTGGTTATGGCCATGGAGAAGAAGAATGATAGGATGCTAGATCTGCTGCAGGAGTGCTTTAGTGAAGGCCTGATCACAATCAATCAGATGACTAAAGGGTTCACCCGAGTTAAGGATGGTCTTGATGATCTGGCTCTGGACATTCCAAACGCAAAGGAAAAATTTGGCTTCTATGTGGAGCATGCACAGAAGAAAGGCTGGCTTCTACCTTCATTTGATTCATCTGCCTCAGACGTCTAA 2112 0.4441 MASGEGFLTDGQREMLKIASQNAENLSSSPKSPSSLLSEHHIKAPAGGKAHTAGIAVRHVRRSHSGKFVRVKKDGAGGKGTWGKLLDTDVESHIDRNDPNYDSGEEPYQLVGSTVTDPLDEFKKAVVSIIEEYFSNGDVELAASDLRELGSSEYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPSQIRDGFFMLLESADDLAVDILDAVDILALFLARAVVDDILPPAFLARARKALPESSNGVQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVDSGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRSAEPLMLKLLKEAAEEGLISSSQMVKGFSRLAEGLDDLALDIPSAKALFESFVPKAISEGWLDASSLTKPAGEDGEIQVEDERVRKYKKEAVTIIHEYFLSDDIPELIRSLEDLGAPEYNSIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLVPLNLEEIGSRLPPNCSGSETVRMARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLDLPFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGLITINQMTKGFTRVKDGLDDLALDIPNAKEKFGFYVEHAQKKGWLLPSFDSSASDV 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi177g00050 703 ProSiteProfiles MI domain profile. 121 242 IPR003891 -
Sebi177g00050 703 SMART ma3_7 286 397 IPR003891 -
Sebi177g00050 703 SMART ma3_7 584 693 IPR003891 -
Sebi177g00050 703 SMART ma3_7 421 532 IPR003891 -
Sebi177g00050 703 SMART ma3_7 122 233 IPR003891 -
Sebi177g00050 703 ProSiteProfiles MI domain profile. 583 702 IPR003891 -
Sebi177g00050 703 ProSiteProfiles MI domain profile. 285 406 IPR003891 -
Sebi177g00050 703 SUPERFAMILY ARM repeat 580 698 IPR016024 -
Sebi177g00050 703 PANTHER PROGRAMMED CELL DEATH 4 3 697 IPR039778 GO:0045892
Sebi177g00050 703 FunFam programmed cell death protein 4 113 264 - -
Sebi177g00050 703 FunFam Programmed cell death protein 4 569 702 - -
Sebi177g00050 703 FunFam Programmed cell death protein 4 271 405 - -
Sebi177g00050 703 SUPERFAMILY ARM repeat 119 279 IPR016024 -
Sebi177g00050 703 SUPERFAMILY ARM repeat 282 403 IPR016024 -
Sebi177g00050 703 Gene3D - 409 563 - -
Sebi177g00050 703 Gene3D - 114 262 - -
Sebi177g00050 703 Pfam MA3 domain 122 233 IPR003891 -
Sebi177g00050 703 Pfam MA3 domain 422 531 IPR003891 -
Sebi177g00050 703 Pfam MA3 domain 286 397 IPR003891 -
Sebi177g00050 703 Pfam MA3 domain 585 692 IPR003891 -
Sebi177g00050 703 SUPERFAMILY ARM repeat 419 576 IPR016024 -
Sebi177g00050 703 ProSiteProfiles MI domain profile. 420 541 IPR003891 -
Sebi177g00050 703 FunFam programmed cell death protein 4 410 564 - -
Sebi177g00050 703 Gene3D - 272 403 - -
Sebi177g00050 703 Gene3D - 571 700 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi177g00050 Sebi-Chr177 955701 960311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi177g00050 587 680 Eukaryotic Initiation Factors Gene Family AT4G30680 32.990 2.28e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi177g00050 - - gmx:100809081 1266.52