Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi177g00049 ATGGATGGCCGAAGGCATTCTGTTGATGTTCCAATTTCTAAAACTCTTGTAGCATTGAGAAGAGTCAGATCATTGAGGGATCCATCAACTAATGGTATTAGCAAGCTCTCTCCTTTGATGGATGATGGACATTGGGAAAATGGTTCCGGTAATGGAATTTCTCTGAGGTTCCTAAATGCTTCTCATGCTTGTGATTCTGATCATGATGGTTTTTTAAGATCAAAGAATTTAGATATTAAGGGACTAAAAGAGGAGGATAATACTAATTTTGAATTGGATTGTGGTCTGTTGAACTCTAAGATGAACTATTATGGGATCTCATGTCATGAAGGGCAGAAACATGATGATGAACTAGTTTACTCTGACTCTGATCCTAAGCAGCAAGGATTTTCTGGAAATAAATCACCAAATGAAAGCTGTTGTAGCAACCTTGGAGGTAGAGGATTGGATTTGGCTTCTATCATGCCTCCTAGTAATCATTTGAAGGATGGGGAATCATACTATTTATCAACTGCATTATCATCACAATTGGGGAGGATAGATCACTCAAAGTCAACCAGAAAATCACTGCGCAAGAATCAAGTGAAACCATCTGAAGTGATGGGTGATAATGCAAGCCATGTTGGGAGTCCATGTCTTTCTGTTCGTGATGCTCTCTCAGCTCATAGTGCCTCAGCACATGCAACTCAAGATGTTGATGTTTTTGTTAATCACCATGGATGTGGAATAAGCTGTTGTTGGTCAAAGTCACCAAGGTTTAGAGAATCAAATCATTATTCTGAAACAGAAGATCTTCCCTTGATATTGCAGCATGTTAATGAGACAGATCATCATGGACATAAAAGCATGAGACACATTGGTGGTGAAATTAGTCCAACTTTGGAAACTCCCAGAAGTTTATCCATGAAATTCAAGCCAAAATCTTTCAGTGATTTGGTTGGACAAAATGTGGTTGGGAAGTCACTTTTGGGGGCTATCTATAGAGGAAGGATAGCATTATTTTATCTCTTCCATGGTCCCCGTGGCACAGGGAAGACCTCTGCATCCAGGATATTTGCTGCTGCACTGAATTGCCTCTCCCTTGAGGAGCAAAGGCCATGTGGTCTGTGTAGAGAATGTGTTGTGTTCTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTGGACTCATTGAGAATCAATCACGTGGACAAGGTTAAATCCCTTGTTAAGAATGCATGCATCCCTCCAGTTTCCTCACGGTTTAAGGTGTTCATTATTGATGAGTGCCAATTATTGCATGGGGAAACATGGGCGAGTCTTTTGAACAGCCTAGAGAATGTTTCTCAACATGCAGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCTCGAGGTGCAGTTTCCCGAGCTCAAAGGTACCACTTTGCAAAAATTAAAGATGCTGACATTGCAAGCAGATTGGAAAAAATTTGTGTTGAAGAAGGGCTTGAATTTGAACAAGATGCTTTGGATTTTATTGCTGCTAAATCCCATGGTTCCCTTAGGGATGCAGAAATGATGCTTGATCAGCTGAGTTTGCTTGGTAAAAAAATCACAATTTCCTTAGTCTATGAGCTTACTGGGGTCATTTCTGATGATGAATTGCTTGAGTTGCTGGACCTGGCTTTGTCTTCTGACACTTCAAATACAGTGATAAGGGCCCGGGAGTTGATGAGATCAAGGATAGATCCTTTACAACTTATATCACAGCTAGCAAATCTTATTATGGATATCCTTGCAGGGAAATGTGAACTTGGTGGTTCTGAAATCAGAAGAAGATTTTCTAGTAGACATACCTCGGAAGCAGACCTGCAGAAACTTAGTCACGCATTAAGAATACTTTCTGAAACAGAGAAGCAGTTGAGAATTTCTAAGAATCAAACAACATGGTTCACTGCAGCTCTTCTCCAGTTAAGCTCTGTAGAATGTTCATCTGGGGATGCAAATGATACCAAGTTATGTGTGAGAGCTGCTTCTGATAGAGATGGTGATTTATGCAGCACATCTTCTACAGGGGAGAGCTTGAAGCATGTTGCTACAGGTCAGTGTGATGAGAAGTCATATGGATTAGGATTGCAGGAGGATCACAATGGGACATTGGATTCCATATGGTATAAAGCTACAGAGATATGTCAATCTAGTAGGCTAAGAACTTTTCTTAAGAAGCAAGGGAAGTTGTCTTCAGTTTGTATTGATCAAGGTCTTGCAGTTGTTGAGTTGGAGTTCCACCACCGTGACTATGTAGCTAGGGCTGAGAAGTCATGGAAACTGATTGCAAGTTCCCTGCAGTTCATATTGGGTTGTAACATTGAGCTCAGAATCAATTATGTACCTTCGGATTCTAAGCATGCTAAATTGAAGAGGTCATCTTTCAATTTATTTAGTTGTTCCCGCAGAATTCTAAGGAAGTCATTATCATCTGATGGACAAGGAAGTGAATCAGACTATGCTGATTACACCTCTCAAAAGCCAATGACAAAGGATCAAACTCTAACTTGTTCCTCGGATTGTGGATCGCGGGTGCCACCACTTGAGTCCTACCCTGGAATGCAGGTTGTAACAACTTTGAGAAGCTGTGAAGGGAATTTGCTAAGCTCAGGGAAGATATTCTTGAATAGGTCATGTCAAGAGACTCCAAAGATTTCTTTTTCTAGAGTTGATTCTCTCAAGGAAGAGGGATGCAATTATGAACATCTTGCTTCATCAACCCTTGATTTAGATAATCAGTCTAACTGTTTTCCTCGATCCCTCTGGCTTCATAGAAAGTTCTCTTCTTCACATGCATCACAGCAGAAGGATTTTGTTTTATCAATCTCCAAGTACCAATGTTCTGAGACTTGTAGCTATGATAAGGAGCCCTGTGTTTTCCCCCACAGCTCTAACAACTATACCAAAGCTGTTGAGGAAAAGTAG 2934 0.4049 MDGRRHSVDVPISKTLVALRRVRSLRDPSTNGISKLSPLMDDGHWENGSGNGISLRFLNASHACDSDHDGFLRSKNLDIKGLKEEDNTNFELDCGLLNSKMNYYGISCHEGQKHDDELVYSDSDPKQQGFSGNKSPNESCCSNLGGRGLDLASIMPPSNHLKDGESYYLSTALSSQLGRIDHSKSTRKSLRKNQVKPSEVMGDNASHVGSPCLSVRDALSAHSASAHATQDVDVFVNHHGCGISCCWSKSPRFRESNHYSETEDLPLILQHVNETDHHGHKSMRHIGGEISPTLETPRSLSMKFKPKSFSDLVGQNVVGKSLLGAIYRGRIALFYLFHGPRGTGKTSASRIFAAALNCLSLEEQRPCGLCRECVVFFSGRSKDVKEVDSLRINHVDKVKSLVKNACIPPVSSRFKVFIIDECQLLHGETWASLLNSLENVSQHAVFVMITPDLDKLPRGAVSRAQRYHFAKIKDADIASRLEKICVEEGLEFEQDALDFIAAKSHGSLRDAEMMLDQLSLLGKKITISLVYELTGVISDDELLELLDLALSSDTSNTVIRARELMRSRIDPLQLISQLANLIMDILAGKCELGGSEIRRRFSSRHTSEADLQKLSHALRILSETEKQLRISKNQTTWFTAALLQLSSVECSSGDANDTKLCVRAASDRDGDLCSTSSTGESLKHVATGQCDEKSYGLGLQEDHNGTLDSIWYKATEICQSSRLRTFLKKQGKLSSVCIDQGLAVVELEFHHRDYVARAEKSWKLIASSLQFILGCNIELRINYVPSDSKHAKLKRSSFNLFSCSRRILRKSLSSDGQGSESDYADYTSQKPMTKDQTLTCSSDCGSRVPPLESYPGMQVVTTLRSCEGNLLSSGKIFLNRSCQETPKISFSRVDSLKEEGCNYEHLASSTLDLDNQSNCFPRSLWLHRKFSSSHASQQKDFVLSISKYQCSETCSYDKEPCVFPHSSNNYTKAVEEK 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi177g00049 977 Gene3D - 473 534 - -
Sebi177g00049 977 MobiDBLite consensus disorder prediction 124 139 - -
Sebi177g00049 977 FunFam DNA polymerase III subunit gamma/tau 473 535 - -
Sebi177g00049 977 NCBIfam DNA polymerase III subunit gamma/tau 299 645 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Sebi177g00049 977 MobiDBLite consensus disorder prediction 812 842 - -
Sebi177g00049 977 CDD HLD_clamp_pol_III_gamma_tau 472 535 IPR045085 -
Sebi177g00049 977 MobiDBLite consensus disorder prediction 117 139 - -
Sebi177g00049 977 MobiDBLite consensus disorder prediction 179 207 - -
Sebi177g00049 977 Pfam DNA polymerase III, delta subunit 316 472 - -
Sebi177g00049 977 CDD AAA 313 463 - -
Sebi177g00049 977 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 522 IPR027417 -
Sebi177g00049 977 Gene3D - 293 470 IPR027417 -
Sebi177g00049 977 SUPERFAMILY post-AAA+ oligomerization domain-like 542 643 IPR008921 GO:0003677|GO:0006260
Sebi177g00049 977 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 300 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi177g00049 Sebi-Chr177 915695 919616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi177g00049 290 628 Core DNA Replication Machinery Family AT1G21690 24.490 1.06e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi177g00049 - - pcin:129308301 1254.58