Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi177g00038 ATGGCTTTATCCCCTCATAAATCCCACCTCTTAATCTTTCCATTCTTCTTCTTGCTCATTCATGCCAAACTAGACCTCCACCCTTCAGACCTCAAAGCTCTCACAACTGTCCTAAAACACATTGGACTGGGAGTCAACGGTCAACTCCACCCATGTAACACAGAGGGTGTGTTCTGTGAGAGGAGGCTCTCCAACAACGAGAGCTATGTTCTAAGGGTCACCAGGCTCATCTTCAACTCCAAGAACCTCAATGGGGTTCTCTCCCCTGCAATTGGGAACCTCTCCGAGCTCAAAGAACTCTCTTTTTCCAACAACCAAATCGTTGACCAAATCCCCTTCCATATCGTTGACTGCAGGAAGCTCGAAATCCTAGACCTCAGAAACAACCAATTATCAGGGAATGTTCCACCTGAGCTTTCTTCTCTCATTCGCCTTAGAATCCTTGATATCTCTTCCAACAAACTTTCTGGAAACTTAAACTTCTTGAAGTTCATCCTTTCTGAGACTCCAGCTGAAAGAATGAAAAGAAACACAGCTCCTGCACCTGCCCTGAAACCCAGTAAGAGTAATGGCCCTGCTCAAGCTCCTGCTCCAACAAGAGCAACCCACAAGCACAAGCATAAATCGAGCAAGAGGAAACTTGCTGGTTGGATTGTTGGTTTTGTAGCTGGGGCACTAGGTGGGATCTTATGTGGTCCTTTGATTAAGAGAGCAGAGGACTTGGCTTTCTTGGAGAAAGAAGATGGACTAGCTTCATTGGAGATCATTGGAAGTGGTGGCTGTGGAGAAGTTTACAAGGCTGAATTACCAGGAAGCAATGGCAAGATGATTGCTATAAAGAAGATTGCTCAACAACTTCAGAGGGATGCAGCAGAATTGGCTGAAGAAGCCAGCAAGCTTTTGAACAAAAAGATGCGTCAAATTCGATCAGAGATCAACACAGTTGGTCAAATTCGACACCGCAACCTCCTACCCTTGCTGGCTCATATGTCCAGGCCTGATTGCCACTATCTTGTCTATGAATATATGAAGAATGGAAGTCTGCAAGATGTGTTGAATCAAGTTCAAGAGGGAAAGCTTCCTTCTGATGACTTTTTCCTGCAAACTGACGAAATGAGTTTGGTCAAGTGGATGAGAAATGTGATGGCGTCAGAAAATCCCAAGCGAGCAATTGATACAAAGCTCATAGGCAATGGATACGAGGAACAAATGCATCTGGTTTTGAGGATTGCCTGCTTCTGTACTTTAGATGATCCAAAGGAAAGGCCTAATAGTAAGGATGTTAGGTGCATGTTGGCCCAAATCAACCACTGA 1314 0.4475 MALSPHKSHLLIFPFFFLLIHAKLDLHPSDLKALTTVLKHIGLGVNGQLHPCNTEGVFCERRLSNNESYVLRVTRLIFNSKNLNGVLSPAIGNLSELKELSFSNNQIVDQIPFHIVDCRKLEILDLRNNQLSGNVPPELSSLIRLRILDISSNKLSGNLNFLKFILSETPAERMKRNTAPAPALKPSKSNGPAQAPAPTRATHKHKHKSSKRKLAGWIVGFVAGALGGILCGPLIKRAEDLAFLEKEDGLASLEIIGSGGCGEVYKAELPGSNGKMIAIKKIAQQLQRDAAELAEEASKLLNKKMRQIRSEINTVGQIRHRNLLPLLAHMSRPDCHYLVYEYMKNGSLQDVLNQVQEGKLPSDDFFLQTDEMSLVKWMRNVMASENPKRAIDTKLIGNGYEEQMHLVLRIACFCTLDDPKERPNSKDVRCMLAQINH 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi177g00038 437 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 68 159 - -
Sebi177g00038 437 Gene3D Phosphorylase Kinase; domain 1 241 342 - -
Sebi177g00038 437 ProSiteProfiles Protein kinase domain profile. 250 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi177g00038 437 MobiDBLite consensus disorder prediction 175 210 - -
Sebi177g00038 437 SUPERFAMILY Protein kinase-like (PK-like) 247 362 IPR011009 -
Sebi177g00038 437 FunFam leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 237 342 - -
Sebi177g00038 437 Pfam Protein kinase domain 253 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi177g00038 437 SUPERFAMILY L domain-like 48 158 - -
Sebi177g00038 437 Coils Coil 276 311 - -
Sebi177g00038 437 Gene3D Ribonuclease Inhibitor 28 168 IPR032675 -
Sebi177g00038 437 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 354 435 - -
Sebi177g00038 437 Gene3D Transferase(Phosphotransferase) domain 1 351 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi177g00038 Sebi-Chr177 734028 735944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi177g00038 358 437 Receptor kinase-like Gene Family AT2G31880 72.500 1.25e-34 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Sebi177g00038 Pkinase 4.5e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi177g00038 - - qsa:O6P43_022621 379.793