Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi177g00004 ATGAACCCCTACGACAGTAGATACTCCGACGCTGCTTCTTTTCGAGGCCGTCGCAGTGATCTGATTGGACCTATTCCGCCGCCGGCTGTTGTCGGTCGCGGCGGTCCGGTTTCGTACGGTGCTCCTTATGCGGCTCCTAGACCCAACGTAGAGTGGGCAATGGTCACGTCGGTGATAGAAAACATGACGGATGAATTGAACAACATTACACTCCCGGAGCAAGATTTCAAGAATTTGGTCCCTTTCGAGAAGAACTTCTACGTTGAGAGCCCTTCGGTAAGGGCCATGTCTGATCAACAAGTTATGCAGTACCGTGCCAGTAGGGAGATCACGGTTCAAGGCCATGATGTGCCGAAACCTATTCGGATGTTTCATGAGGCGAATTTTCCTGATTACTGCCTTGAGGTCATAGCTAAATTGGGTTTTGTTGAGCCCACTCCAATTCAAGCTCAGGGTTGGCCCATGGCTCTGATGGGTAGAGATTTGATTGGCATTGCTGAGACTGGATCGGGTAAAACTTTGGCTTATCTGCTTCCTGCTTTAGTGCATGTCAATGCACAACCTCGATTGGTACAAGGGGAAGGTCCCATTGTCTTAGTTTTAGCACCAACTAGAGAGTTAGCTGTTCAAATTCAACAAGAAGCTGTGAAATTTGGGTCACGAGCAAATATTAGAATTACATGCATCTATGGTGGTGCACCGAAAGGGCCTCAAATTCGTGACCTTAAAAGAGGTGTTGAGATTGTTATTGCTACCCCTGGTCGGCTAATAGATATGTTGGAAGCTCAGCACACAAACCTACAGAGAGTGACTTACCTTGTCTTGGATGAAGCTGACCGAATGTTGGACATGGGTTTTGAACCTCAGATACGGAAAATTGTTGGCCAGATTCGACCAGATAGGCAGACATTATATTGGAGTGCTACATGGCCAAGGGAGGTTGAAACTCTGGCAAGGCAGTTTCTGCGCAACCCATATAAGGTAATTATTGGATCACCAGATCTAAAAGCTAATCAATCTATAAATCAAGTCGTTGAAGTTGTAACTGACATGGAGAAATACAATAGATTGATCAAACTGCTGAAAGAAATGATGGATGGGAGCCGAATTCTAATATTTATGGAAACAAAAAAGGGATGTGACCAAGTTACAAGACAATTGAGAATGGATGGATGGCCAGCACTGTCCATCCATGGTGATAAAAACCAGTCTGAAAGGGATTGGGTTTTGGCTGAATTTAAGAGTGGCAGGAGTCCAATAATGACTGCCACTGATGTTGCTGCCCGGGGTCTTGATGTGAAAGACATAAAATGTGTGATCAATTATGATTTTCCATCAAGCCTGGAAGATTATGTCCACAGAATTGGTCGAACTGGTCGTGCAGGGGCTAAAGGAACTGCATACACTTTTTTTACTCATGCCAACGCCAAGTTTGCTAGGGATCTGATTAAAATTTTACAAGGTGCTGCTCAGGTTGTAAGTCCTGCACTGTCTGAATTGGCTCGGTCAGCTGGGTTTGGTCATCATGGATCTGGAGGAAGCTTTCGCTCAAGAGGACGAGGAGGCTATGGCAATCGGGGTTCAGTATCAGGATCCAATGCCACGCCAATAGGTTCGAAGAGGCCTTGGCATTGTCTGTAG 1641 0.4583 MNPYDSRYSDAASFRGRRSDLIGPIPPPAVVGRGGPVSYGAPYAAPRPNVEWAMVTSVIENMTDELNNITLPEQDFKNLVPFEKNFYVESPSVRAMSDQQVMQYRASREITVQGHDVPKPIRMFHEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALMGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGEGPIVLVLAPTRELAVQIQQEAVKFGSRANIRITCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSPDLKANQSINQVVEVVTDMEKYNRLIKLLKEMMDGSRILIFMETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHANAKFARDLIKILQGAAQVVSPALSELARSAGFGHHGSGGSFRSRGRGGYGNRGSVSGSNATPIGSKRPWHCL 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi177g00004 546 Gene3D - 331 504 IPR027417 -
Sebi177g00004 546 SMART ultradead3 141 344 IPR014001 -
Sebi177g00004 546 CDD SF2_C_DEAD 341 471 - -
Sebi177g00004 546 Pfam DEAD/DEAH box helicase 146 317 IPR011545 GO:0003676|GO:0005524
Sebi177g00004 546 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 274 282 IPR000629 -
Sebi177g00004 546 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 122 150 IPR014014 GO:0003724
Sebi177g00004 546 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 356 501 IPR001650 -
Sebi177g00004 546 Gene3D - 95 330 IPR027417 -
Sebi177g00004 546 CDD DEADc_DDX5_DDX17 134 328 - -
Sebi177g00004 546 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 153 328 IPR014001 -
Sebi177g00004 546 MobiDBLite consensus disorder prediction 507 546 - -
Sebi177g00004 546 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 101 501 - -
Sebi177g00004 546 FunFam probable ATP-dependent RNA helicase DDX17 84 331 - -
Sebi177g00004 546 SMART helicmild6 381 462 IPR001650 -
Sebi177g00004 546 FunFam ATP-dependent RNA helicase RhlB 332 505 - -
Sebi177g00004 546 Pfam Helicase conserved C-terminal domain 352 462 IPR001650 -
Sebi177g00004 546 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 482 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi177g00004 Sebi-Chr177 77049 81539 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi177g00004 109 482 Eukaryotic Initiation Factors Gene Family AT3G19760 35.467 1.19e-71 233