Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi176g00025 ATGGAATCTAGAGTAATAGTCCTTCACATATACCCTAGTGTTGGTCTAGATATACTTCACGTGGCTCAGTCACTTGGCATGATGGGAAGTGGTTATGTATGGATAGCCACTGATTGGCTTTCTACAGTTCTAGATTCATACCCTTCCTTGACCACATCTCAAGCCATGAATGATATCCAAGGTGTTATCACCTTGCGGATGAACACCCCAGAATCAGAAATCAAGAAAAAATTTACTTCTAGGTGGAGCAACCTTAGCCATGAAAAGGATTTTGGGTTGAACATCTTTGGTCTATATGCCTATGACACGAAAATTTTAGAGGTTAACAGAACAGGATTAGCAGGGCAAATGATGTTTGGTTCAGATGGAAACTTAATGCATCCATCATATGAAGTCATTAATGTGATAGGCACTGGAATTAGGAGGATTGGTTATTGGTCTGATTCCTCTGGCCTACACACAGGGGAAGCTCCTAATCATTCCAATTCCAGTGAAGGACTATTTGGTGTCATCTGGCCTGGTCAAACAACTCAAACCCCTCGTGGTTGGGTTTTTTCCAGCAGTGGAAGATCCTTGAAAATTGGGGTGTCACTTAGAATTAGTTACCGTGAATTTGTGTCAAGATCTGAAAGCACTGAAATGTTTGGTGGTTATTGCATAGATGTGTTTACTGCTGCAAGGGACTTGTTGCCTTATCCAGTTCCATACAAGTTTATTCCATTTGGTGATGGTAAAACTAACCCATTAAATACAGAACTTCTCCATAGGATCACAATTGGTGAGTTTGATGCTGTGGTGGGGGACATTACCATTACCACAAACCGAACTAAGATAGTGGATTTTACACAGCCATATATTGAATCTGGGCTAGTTGTTGTGGCACCTATAAGGAAATTGAAATCAAGCCCTTGGGCTTTCCTTAGACCATTTACTCCAATGATGTGGTTTGTCACAGGAATGTGTTTCTTGGCTGTGGGAGCTGTTGTGTGGATTTTAGAACGTCGCCTAAATGATGACTTTAGAGGCCCAGCTAGAAGGCAGTTTGTAACCATTATATGGTTTAGCTTTTCAACCCTGTTTTTTACACATAGAGAGAAAACTGTGAGCACCCTTGGTCGTTTGGTGCTAATCATATGGCTGTTTGTGGTTTTGATACTCAACTCAAGCTATATTGCAAGCCTTACCTCCATCCTTACTGTGGAACAGCTCTCTTCCCCTGTTAAGGGAATTGAAAGCTTAGTAATAAGCAACGACCGCATTGGTTACCTGAGGGGTTCATTTGCTGAAAATTCTCTGACTGAGGAGCTCAACATACACAGATCCAGGCTTGTTCCTCTCAACTCCCCATCAGAATATGAAAAAGCCTTGAAGGATGGCCCTGCTAATGGAGGTGTTACTGCAATAATAGATGAGCGTGCATACATGGAGCTCTTCCTAGCAACCAGATGTGAATTTGGTATTGTTGATCAAGAGTTCACCAAGATGGGATGGGGTTTTCCCCATGCTATTCCACCAGCGAGCTGTTCGTGCTACCTTCCTGTGAACCCTGTCGCCGCCGGACAACTGGAAGCAGTGCCGTCGCGCGTCGCCGCTGACTGA 1599 0.4328 MESRVIVLHIYPSVGLDILHVAQSLGMMGSGYVWIATDWLSTVLDSYPSLTTSQAMNDIQGVITLRMNTPESEIKKKFTSRWSNLSHEKDFGLNIFGLYAYDTKILEVNRTGLAGQMMFGSDGNLMHPSYEVINVIGTGIRRIGYWSDSSGLHTGEAPNHSNSSEGLFGVIWPGQTTQTPRGWVFSSSGRSLKIGVSLRISYREFVSRSESTEMFGGYCIDVFTAARDLLPYPVPYKFIPFGDGKTNPLNTELLHRITIGEFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKLKSSPWAFLRPFTPMMWFVTGMCFLAVGAVVWILERRLNDDFRGPARRQFVTIIWFSFSTLFFTHREKTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSPVKGIESLVISNDRIGYLRGSFAENSLTEELNIHRSRLVPLNSPSEYEKALKDGPANGGVTAIIDERAYMELFLATRCEFGIVDQEFTKMGWGFPHAIPPASCSCYLPVNPVAAGQLEAVPSRVAAD 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi176g00025 532 Pfam Ligand-gated ion channel 314 418 IPR001320 GO:0015276|GO:0016020
Sebi176g00025 532 SUPERFAMILY Periplasmic binding protein-like I 3 183 IPR028082 -
Sebi176g00025 532 Gene3D - 128 152 - -
Sebi176g00025 532 FunFam Glutamate receptor 303 433 - -
Sebi176g00025 532 SUPERFAMILY Periplasmic binding protein-like II 167 500 - -
Sebi176g00025 532 Gene3D - 186 301 - -
Sebi176g00025 532 Gene3D - 1 99 - -
Sebi176g00025 532 SMART GluR_14 193 505 IPR001320 GO:0015276|GO:0016020
Sebi176g00025 532 FunFam Glutamate receptor 187 303 - -
Sebi176g00025 532 Pfam Bacterial extracellular solute-binding proteins, family 3 204 475 IPR001638 -
Sebi176g00025 532 Pfam Receptor family ligand binding region 2 84 IPR001828 -
Sebi176g00025 532 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 504 IPR015683 -
Sebi176g00025 532 Gene3D - 104 127 - -
Sebi176g00025 532 Gene3D - 302 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi176g00025 Sebi-Chr176 679902 759227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi176g00025 1 499 Ion Channels AT1G42540 56.172 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi176g00025 K05387 - gmx:100790502 867.455