Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi176g00021 ATGTCGTGTTCTTCTTCATCTGGGTCGGAAGAAGATGATGAGGGGTTCGACTCCTACCGGAAGGGAGGGTACCACGCAGTCAGGGTCGGCGATCAGTTCGCCGGCGGCAGGTACATAGCGCAGAGGAAGCTCGGTTGGGGTCAGTTTTCAACCGTTTGGCTTGCTTATGATACTACCACCTCTGCATATGTTGCTCTCAAGATCCAGAAAAGTGCAGCTCAATTTGTTCAGGCTGCCCTTCATGAGATTGATATTCTTTCATCCATCGCTGATGGTGCCCCTTTGAATACAAAATTTGTTGTCCAATTAATTGACCACTTTAAGCACACAGGCCCTAATGGCCAGCACCTTTGCATGGTCCTTGAGTTTCTTGGAGATAGCTTGCTTCGTCTAATCAAATACAACCGTTACAAAGGCCTTCCAATGAATAAAGTTAGGGAGATTTCTAAATGCATGTTGACTGGTTTGGATTACTTGCATAGAGAACATGGTATTATCCACACAGACCTGAAACCAGAAAATGTTCTTCTGGTTTCTACCATTGACCCTGCAAAAGACCCTATAAGATCTGGACTCGCCCCAATTTTAGAGAGGCCTGAGCCTGAGGGAAGCATAAATGGTGGAGTTACAAGTCTTATTGAGAAAAAGTTAAAAAGGAGAGCAAGGAGGGCAGTTGCTAAAATATCTGGAAGAAGAGATTCAATGGGAGGAACAGGAGACGCCCCAAAATCTGATAGAAATATTGATGGGATTGACGTGAGATGCAAGGTGGTAGATTTTGGAAATGCATGTTGGGCTGATAAGCAGTTTGCAGAAGAAATTCAGACAAGACAGTACAGAGCTCCTGAAGTAATACTGCAGTCTGGTTATTCCTTCTCTGTTGACATGTGGTCTTTTGCTTGTATTGCTTTTGAGCTTGCCACTGGTGATATGTTGTTTACTCCCAAGGTTGGACAAGGTTTTAGTGAAGATGAGGATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCCCGGAAGATTGCTACTGCCGGCACAAAATCGAAGGATTTCTTTGACAGACATGGCGATCTCAAAAGGATTCGAAGACTAAAATTTTGGCCGCTGAACAAATTGTTGATTGATAGATATAAATTTTCAGAGAGTGATGCTCATGAATTTTCAGAGTTTCTTTTACCACTTCTTGATTTTGCACCTGAGAAGCGGCCAACTGCACAGCAGTGCCTCCAACACCCATGGCTCAATGATAGGGAGTCTACAACAAATGAAATGAGAAATGAAGCTAGTGTGGAGAAGGTTGATGTTGGGATGAGCAACCTTAAAATCAAGGTGGGAAAATGA 1344 0.4382 MSCSSSSGSEEDDEGFDSYRKGGYHAVRVGDQFAGGRYIAQRKLGWGQFSTVWLAYDTTTSAYVALKIQKSAAQFVQAALHEIDILSSIADGAPLNTKFVVQLIDHFKHTGPNGQHLCMVLEFLGDSLLRLIKYNRYKGLPMNKVREISKCMLTGLDYLHREHGIIHTDLKPENVLLVSTIDPAKDPIRSGLAPILERPEPEGSINGGVTSLIEKKLKRRARRAVAKISGRRDSMGGTGDAPKSDRNIDGIDVRCKVVDFGNACWADKQFAEEIQTRQYRAPEVILQSGYSFSVDMWSFACIAFELATGDMLFTPKVGQGFSEDEDHLALMMELLGKMPRKIATAGTKSKDFFDRHGDLKRIRRLKFWPLNKLLIDRYKFSESDAHEFSEFLLPLLDFAPEKRPTAQQCLQHPWLNDRESTTNEMRNEASVEKVDVGMSNLKIKVGK 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi176g00021 447 ProSiteProfiles Protein kinase domain profile. 38 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi176g00021 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Sebi176g00021 447 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Sebi176g00021 447 FunFam Serine/threonine-protein kinase SRPK 117 415 - -
Sebi176g00021 447 Pfam Protein kinase domain 254 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi176g00021 447 Pfam Protein kinase domain 39 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi176g00021 447 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 242 426 - -
Sebi176g00021 447 SMART serkin_6 38 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi176g00021 447 Gene3D Transferase(Phosphotransferase) domain 1 92 415 - -
Sebi176g00021 447 SUPERFAMILY Protein kinase-like (PK-like) 32 421 IPR011009 -
Sebi176g00021 447 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Sebi176g00021 447 CDD STKc_SRPK 27 415 - -
Sebi176g00021 447 FunFam Protein kinase superfamily protein 24 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi176g00021 Sebi-Chr176 548583 552603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi176g00021 4 416 EF-hand Containing Proteins AT5G22840 51.620 3.49e-168 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Sebi176g00021 Pkinase 2.9e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi176g00021 K08832 - gmx:100814976 785.408