Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi176g00014 ATGCCGAAGGTCAAAGCTGACACCAAACCCGCTGATAACCGCTTGAAGCGTAAGGGCGCTGGAGCCGGAAGGAAGCAGACGAAGAAAGCCGCGAAGGATCCAAACAAGCCAAAGAGGCCTCCGAGTGCTTTCTTTGTTTTCATGTCTGAGTTCAGAGAGCAGTTCAAGAAGGAGCATCCAAACAACAAATCTGTCGCCGTTGTCGGGAAAGCTGGCGGTGAGAAATGGAAATCACTGTCTGATGCTGAGAAGGCTCCCTATGTTGCTAAGGCAGAGAAGAAGAAAGAAGAGTATGAAAAAAGTATTCAGGCCTACAACAGGAAAAAGGATGGTGAGGAGGAGTCTGACAAGTCAAAGTCTGAAGTCAATGATGAGGATGAAGAGGAGGTGCTGGGAACGCTGGATGAAGCTTAG 414 0.4879 MPKVKADTKPADNRLKRKGAGAGRKQTKKAAKDPNKPKRPPSAFFVFMSEFREQFKKEHPNNKSVAVVGKAGGEKWKSLSDAEKAPYVAKAEKKKEEYEKSIQAYNRKKDGEEESDKSKSEVNDEDEEEVLGTLDEA 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi176g00014 137 Coils Coil 88 115 - -
Sebi176g00014 137 SMART hmgende2 36 107 IPR009071 -
Sebi176g00014 137 CDD HMG-box_AtHMGB1-like 38 88 - -
Sebi176g00014 137 Gene3D High mobility group box domain 21 122 IPR036910 -
Sebi176g00014 137 MobiDBLite consensus disorder prediction 76 118 - -
Sebi176g00014 137 MobiDBLite consensus disorder prediction 1 19 - -
Sebi176g00014 137 SUPERFAMILY HMG-box 24 106 IPR036910 -
Sebi176g00014 137 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Sebi176g00014 137 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 5 129 IPR031061 -
Sebi176g00014 137 MobiDBLite consensus disorder prediction 119 137 - -
Sebi176g00014 137 MobiDBLite consensus disorder prediction 1 43 - -
Sebi176g00014 137 MobiDBLite consensus disorder prediction 58 137 - -
Sebi176g00014 137 Pfam HMG (high mobility group) box 37 106 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi176g00014 Sebi-Chr176 394744 395863 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Sebi176g00014 HMG_box 1.3e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi176g00014 K25507 - gmx:100499992 180.644