LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi176g00008	ATGAATGAGAGGAGGAAGTTGCATTATGTCGAACAACCAGTGGGTGAGGAGGTATTTGAAGATTATTCTAAAGTGGAACATAACTCTGGCAATGAAGAGCAATATAATGAGATATTTCAAGATGAGGCAGATGGAGAGGGGAATAATGCAGTGTTTGATCATGATGGAAATAAAGAGAGTGAAAATGTGGTGTTTGAGGATGAGTCAAATGAAGAGGAGCAAAATCTGTCCCTTGAGGATGAAAGAAGTAGAGAAAGGCAAAATGTGGTGTTTGAGGATGATACGGAGCAAATGGATTTTGTGTCCATAAAAACACAAAAAGAAAAAGCAAGAAAACAGAAGAGGTTTTGCAGCAAGAGTTTGTGTTACAAGGAAGGTGAGCGACGAAATAGGGGACCTACAATGGAAGAAAGAACAAAAGAGCCTAGAGCTGAGACTAAGAGTAGGTGTGGAGCAAAGTTTAGAGTGAATGTTGATAAAGTTTATGGTCGTTGGTATGCATCGTGCTTTGAATATGAGCATAGTCATGAGTTATTAGATCCTATATATTGTGCAATGTTAGCCTCTCATAGAGTCATGAGTGATAGTGACATAAGTCAAATGAATAGTATGTTGAATGTTGGTATTGGAGCATCACACATCTTTGGAGTGTTTACTAGCCAAAGTGGAGAGTATGGAAAAGTTGGATTCAAGAAGAAGGATATTCATAATCAAATTCTTCGGCAAAGAAAGTTGCAATCGTCTGATGTGGCTAAAGCAATACGGTTCTTATGTGAGTTCATGAAGGAAGATTCAATGATGTATTGTGAGCCAACAGTTGATAGTGAAGGTAGACTTGAGCACTTATTTTGGAGTGATGGCATTAGCCAACTTAATTACGAAATCTTGGTGAAGTGCTTGCATTTGATGCTACATATGCTTGAAATCAATTATCCCGAACCTGCAAATGTTTTTCACAATGGTATTGGTGTTATCCCTGACCTTGCTATTCCTCCTCCCTTAAATATGGCCGAGATGCATCATGTTTTTGTGGACAAGATTTTGATTGACAAGAATGTGTCTTCACACAATATGACTTTGCCTGTTGTATTATGTAAATGCATTCCTTTGAATGCCACAAATATTCTTTTGAGAGATAAATATCTTACTAATTTTGAATGTCGCTTCCGCTGGGCAACAAGAAGACTGAATGAAGGTTCAGCGTCAGCGAGCACTGATAGTAAGAACGTGGGGTTCTCAGGGACGACGAGCAGCGCAGGAAGGAGCCAATTTTCAGAGCTTGCGAGTGGAAGCTTTGGCGGTGGTGAAGGGCCTTTTCCTCTTCCTTCTCCAAATGGCCAGATTCTGGAAAGGCCAAACATGAAGGTGTTCAGTTATGCAGACCTCAAATCTGCCACCAAGAGCTTCAAATCCGATACATTGCTCGGTGAAGGTGGTTTTGGAAGAGTTTACAAAGGGTGGTTGGATGAGAAGACCCTCACACCCGCCAGAGCAGGCTCTGGTATGGTCGTTGCCATCAAAAAATTGAACCCCGAAAGCACGCAAGGATTTCAAGAATGGCAGTCAGAAATCAACTTTTTGGGAAGGCTTTCTCACCCCAACCTGGTCAAGCTATTGGGTTATTGTTGGGATGATGAGGAGCTTCTTCTTGTGTATGAGTTCATGCCAAAGGGAAGCTTGGAGAATCATCTCTTTCGAAGAAATCCTAACATAGAACCACTTTCTTGGAACACCCGAATTAAAATAGCTATTGGTGCAGCTCGGGGCCTGGCTTTCTTGCACACTTCTGAAAAAGTCATATACAGAGATTTCAAGGCCTCAAATATACTACTCGATGGGAATTACAATGCAAAAATCTCAGATTTTGGCTTGGCTAAATTGGGGCCTTCTGGGGGAGAATCACATGTAACTACTAGGGTCATGGGCACGTATGGTTATGCTGCTCCAGAATACATTGCAACAGGGCACTTGTATGTAAAGAGTGATGTGTACGGCTTTGGTGTAGTGCTGCTTGAAATTCTGACAGGCATGAGGGCACTGGATACAAAGAGGCCAACAGGGCAGCAAAACTTGGTTGAATGGTTGAAGCCTTGTCTCTCCAACAAGAAAAAGTTGAAAACCATCATGGATGCTAGGATAGAGGGTCAATATTCACCCAAGGCAGCATTGCAAGCAGCACAGCTTACACTGAAATGCCTAGAACCTGACCCTAAACAACGTCCTTCTATGAAAGAGGTGCTTGAGGCGTTGGAAGGGATTGAAGCTATTAAGGTCAAACCCAAGGAATCTAAGAACCTCAATTCCCATCAACCTCAACTTCATGCTAGGCAGAGAGTTGTGAAAGTATAG	2349	0.4198	MNERRKLHYVEQPVGEEVFEDYSKVEHNSGNEEQYNEIFQDEADGEGNNAVFDHDGNKESENVVFEDESNEEEQNLSLEDERSRERQNVVFEDDTEQMDFVSIKTQKEKARKQKRFCSKSLCYKEGERRNRGPTMEERTKEPRAETKSRCGAKFRVNVDKVYGRWYASCFEYEHSHELLDPIYCAMLASHRVMSDSDISQMNSMLNVGIGASHIFGVFTSQSGEYGKVGFKKKDIHNQILRQRKLQSSDVAKAIRFLCEFMKEDSMMYCEPTVDSEGRLEHLFWSDGISQLNYEILVKCLHLMLHMLEINYPEPANVFHNGIGVIPDLAIPPPLNMAEMHHVFVDKILIDKNVSSHNMTLPVVLCKCIPLNATNILLRDKYLTNFECRFRWATRRLNEGSASASTDSKNVGFSGTTSSAGRSQFSELASGSFGGGEGPFPLPSPNGQILERPNMKVFSYADLKSATKSFKSDTLLGEGGFGRVYKGWLDEKTLTPARAGSGMVVAIKKLNPESTQGFQEWQSEINFLGRLSHPNLVKLLGYCWDDEELLLVYEFMPKGSLENHLFRRNPNIEPLSWNTRIKIAIGAARGLAFLHTSEKVIYRDFKASNILLDGNYNAKISDFGLAKLGPSGGESHVTTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEILTGMRALDTKRPTGQQNLVEWLKPCLSNKKKLKTIMDARIEGQYSPKAALQAAQLTLKCLEPDPKQRPSMKEVLEALEGIEAIKVKPKESKNLNSHQPQLHARQRVVKV	782

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi176g00008	782	MobiDBLite	consensus disorder prediction	761	782	-	-
	Sebi176g00008	782	ProSitePatterns	Protein kinases ATP-binding region signature.	475	508	IPR017441	GO:0005524
	Sebi176g00008	782	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	599	611	IPR008271	GO:0004672\|GO:0006468
	Sebi176g00008	782	ProSiteProfiles	Protein kinase domain profile.	469	753	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi176g00008	782	PIRSF	SRK	445	781	IPR024171	GO:0004674
	Sebi176g00008	782	PIRSF	SRK	7	164	IPR024171	GO:0004674
	Sebi176g00008	782	PANTHER	OS01G0588500 PROTEIN-RELATED	407	753	-	-
	Sebi176g00008	782	Gene3D	Phosphorylase Kinase; domain 1	453	554	-	-
	Sebi176g00008	782	MobiDBLite	consensus disorder prediction	40	85	-	-
	Sebi176g00008	782	CDD	STKc_IRAK	475	753	-	-
	Sebi176g00008	782	MobiDBLite	consensus disorder prediction	400	419	-	-
	Sebi176g00008	782	MobiDBLite	consensus disorder prediction	47	64	-	-
	Sebi176g00008	782	Gene3D	Transferase(Phosphotransferase) domain 1	555	775	-	-
	Sebi176g00008	782	SUPERFAMILY	Protein kinase-like (PK-like)	446	751	IPR011009	-
	Sebi176g00008	782	FunFam	Serine/threonine-protein kinase BIK1	441	554	-	-
	Sebi176g00008	782	Coils	Coil	68	88	-	-
	Sebi176g00008	782	Pfam	FAR1 DNA-binding domain	97	179	IPR004330	-
	Sebi176g00008	782	Pfam	Protein tyrosine and serine/threonine kinase	472	750	IPR001245	GO:0004672\|GO:0006468
	Sebi176g00008	782	FunFam	Serine/threonine-protein kinase PBS1	555	769	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi176g00008	Sebi-Chr176	245193	251844	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi176g00008	455	750	Glycoside Hydrolase	AT3G07070	52.013	4.01e-99	311

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Sebi176g00008		PK_Tyr_Ser-Thr	1.8e-48	CL0016
	TF	FAR1	Sebi176g00008		PK_Tyr_Ser-Thr	1.8e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi176g00008	-		-	gmx:100794193	660.988