Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi175g00033 ATGAGCGAGGAGTTGGGGTTTGAGTTCAGCATCAACATGGAAACAGAAGCATGCCCTTTTCCCCCATCACATTTCAAGAAGCCCAAAATATCGCCAACAGCAGAAACACCCTTCAATCATCGTAACTTGAAGGTGAAGACTCAGCTCTGCAGAAGGTTCAGGCAGGGAATGTGCACTCTTGGGTCCAAATGCAACTATGCTCATGGCATGGGTGAGCTTAGACGCCCCTCATTTCAAGAACACAGACCCAAACTATGCAGATTGTTCCTTCGAAACAAACACTGCACCTATGGCCACACCTGTCGCTTCCTTCATTCAACTGCTGCAGAAAGTGTTGATTCTCCAAACAACTGGGAGGACTTCGAGATTAAAGGCTACACTTTTCGGGGAAATTCTCATGCACAGCTTCAACAACAATACAGGACAATGCAAAGTTCTGCTCATGCTACAATTGATGGTAACTCTTCTGCAGAATACAGGACAATGCAATCTTCTACTGCTGCTACACATACAAATGCCTTAACCAGCACAGTTGCAACTAGCTCTCTGCATAAGAATGAACTATATGTTGTGAAGGGGATATTCAAGGAAAATGAACTGCAAAGGATCAGTCGCATCTATGCTGATTGGATTTAA 636 0.4434 MSEELGFEFSINMETEACPFPPSHFKKPKISPTAETPFNHRNLKVKTQLCRRFRQGMCTLGSKCNYAHGMGELRRPSFQEHRPKLCRLFLRNKHCTYGHTCRFLHSTAAESVDSPNNWEDFEIKGYTFRGNSHAQLQQQYRTMQSSAHATIDGNSSAEYRTMQSSTAATHTNALTSTVATSSLHKNELYVVKGIFKENELQRISRIYADWI 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi175g00033 211 ProSiteProfiles Zinc finger C3H1-type profile. 80 108 IPR000571 GO:0046872
Sebi175g00033 211 PANTHER CCCH ZINC FINGER/TIS11-RELATED 10 152 IPR045877 GO:0003729
Sebi175g00033 211 ProSiteProfiles Zinc finger C3H1-type profile. 44 71 IPR000571 GO:0046872
Sebi175g00033 211 SUPERFAMILY CCCH zinc finger 43 75 IPR036855 GO:0046872
Sebi175g00033 211 SUPERFAMILY CCCH zinc finger 80 107 IPR036855 GO:0046872
Sebi175g00033 211 Gene3D - 79 110 - -
Sebi175g00033 211 Gene3D - 39 75 - -
Sebi175g00033 211 SMART c3hfinal6 44 70 IPR000571 GO:0046872
Sebi175g00033 211 SMART c3hfinal6 82 107 IPR000571 GO:0046872
Sebi175g00033 211 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 46 70 IPR000571 GO:0046872
Sebi175g00033 211 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 106 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi175g00033 46 110 C3H Transcription Factor Family AT1G68200 41.176 6.79e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi175g00033 zf-CCCH 1.8e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi175g00033 - - cam:101493245 196.438