LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi174g00095	ATGGGGAAGATAGAAAAATTACACATGAACTTAACACCACATTTTCTATCATCCTTGTCATCTTTGATGGCTATCCTCCTGGTCATTCTCTTGGCCTTGGCCTCACCTACATTTTCAGCAGGCCCTGCTTCTAACTTCATTCCTAAAGATAACTTCCTCATTGATTGTGGTGCAGAAAATGTAGCCACCCTCCCTGATGGAAGACAATTCAAATCAGACCCACAAGCCAATTCTTTCTTGCAAGCCAATGATGATTATAAAGTCTCAGCTAATGATGTGGATGTTCCTTCTCCTATTTACTCAAATGCAAGGATATTCATTCAGGAAGCTAAGTACTCCTTCCATTTGGTTCAACCAGGATTTCATTGGGTTCGCCTTCATTTCTTCCCTATTAAAAACAGTGTTTTTGATCTTCAAAAGGCCACTTTCTCTGTCAACACAGATAAATTTGTCCTTCTTCACAGCTTCAATGTTAACAACACTGAAAAGGCAATCCTCAAGGAGTACCTTATCAATGCAACTGAACCCCATTTCACCTTATCCTTCATTCCCTTGAAAAACTCAGCTGCATTCATCAATGCCATTGAACTTGTTTCAGCTCCTGATAACCTCATCTTTGATAGTGGTGCCAGCCTTTTCCCTGTTGGAGAGTTTTCTGGCCTTACAGCTTATGGTTTCCAACCTGTTTATAGGCTCAACAATGGAGGACCTATGATCACCCCATCAAATGACACATTGGCAAGAACTTGGGAATCTGATGAGCCTTACCTCACAAACAAGAACTTGGCAAAAGGTGTCTCAGTGGCTACCACTGCCATTAAGTTCCCCCAAGACACACCAACAATTTCTCCTCTTATTGCACCACAAACAGTGTATGCTTCTGCCACTGAAATGGGTGATGCTGGTGTTAACCAGCCAAATTTCAATGTCTCATGGAAATTTGATGTGGACACTTCTTTTAGTTACTTCATTAGATTGCATTTCTGTGACATTGTAAGCAAAGGGCTTAATGAACTCTACTTCAATGTCTATGTTAATGGGAAAATGGCAATTTCTAACTTGGATTTGTCAGCTATTACTGGTGCCTTGTCAACCCCATATTACAAAGACATTGTAGTCAATGCAACATTGATGTCTCAAGGACTAACAGTTCAGGTTGGTCCAGCAAATGCTGATGGTGGAAATGCCAATGCCATTATGAATGGTATAGAGGTCTTGAAGATAAGCAACTCTGTGGATAGTTTGGATGGAGAATTTGGGGTTGATGGAAGAAGGATTGGTGGTTCTAACCGTGGGACAGTGGCAGCAGTTGGGTTTGCCATGATGTTTGGAGCCTTTGTGGGACTTGGTGCTATGGTGATCAAGTGGCACAAGAGGCCACAAGACTGGCAAAAGAGGAACAGCTTCTCTTCATGGTTACTTCCTTTACATGCTGGTGATACAAGCTTCATGAGCAGCAAAACCTCAATGGGAAAGAGCAACATCTACTCCTCATCAATGGGATTAGGAAGGTTTTTCTCCTTTGCAGAATTACAAGAAGCAACCAAAAACTTTGATTCCAAGAACATTATTGGTGTTGGTGGATTTGGTAATGTCTATTTGGGTGTGATTGATGAGGGGACTCAAGTGGCAGTCAAGAGAGGAAATCCACAATCAGAACAAGGAATCAATGAATTCCAAACTGAAATTCAAATGTTATCCAAGCTTAGACACAGGCATTTGGTGTCTTTGATTGGATACTGTGATGAGAATGAAGAGATGATCCTTGTTTATGAGTACATGCCTAATGGACATTTCAGAGACCATCTTTATGGAAAGAACTTGCCATCACTTTCTTGGAAGCAAAGGTTAGAGATTTGCATTGGATCAGCTCGTGGTCTTCACTACCTTCACACAGGAACTACACAAGGTATCATCCACCGTGATGTTAAGACCACAAACATCTTACTTGATGAGAATTTCACAGCCAAAGTTTCTGACTTTGGACTTTCAAAGGATGCACCTATGGGTCAGGGTCATGTTAGTACAGCAGTGAAAGGTAGTTTTGGTTATCTTGACCCTGAATACTTCAGGAGACAACAATTGACAGAAAAATCAGATGTATACTCATTCGGGGTGGTCCTTCTTGAAGCACTATGTGCAAGGCCAGCTATTAACCCTCAGTTGCCTAGAGAACAAGTAAACTTGGCTGATTGGGCAATGCAATGGAAGAGAAAAGGGTTGCTTGATAAGATCATTGATCCTCTTCTTGTTGGTTCAATCAACCCTGAATCTATGAAGAAATTTGCTGAGGCTGCTGAGAAATGTTTGGCTGATCATGGTGTTGATAGGCCTTCAATGGGAGATGTACTTTGGAACTTGGAATATGCATTGCAGCTTCAAGAAGCATTCACACAAGGTAAGGCAGAGGATGAGATTAAGTCAACTGCAGCTGTTCCTACTTCACCTGCTCCAGTTCCAACACCTTCCTCTACCTCTGATGACACCCCAGTTTCACGTCCAGAAGTGAATAATAATAATAATAGTCCACCAGAAGTGCATGCTATTGATGACCATTCTGGAACTGCAATGTTTGCACAGTTTAATAATCTTAATGGCAGGTGA	2604	0.4151	MGKIEKLHMNLTPHFLSSLSSLMAILLVILLALASPTFSAGPASNFIPKDNFLIDCGAENVATLPDGRQFKSDPQANSFLQANDDYKVSANDVDVPSPIYSNARIFIQEAKYSFHLVQPGFHWVRLHFFPIKNSVFDLQKATFSVNTDKFVLLHSFNVNNTEKAILKEYLINATEPHFTLSFIPLKNSAAFINAIELVSAPDNLIFDSGASLFPVGEFSGLTAYGFQPVYRLNNGGPMITPSNDTLARTWESDEPYLTNKNLAKGVSVATTAIKFPQDTPTISPLIAPQTVYASATEMGDAGVNQPNFNVSWKFDVDTSFSYFIRLHFCDIVSKGLNELYFNVYVNGKMAISNLDLSAITGALSTPYYKDIVVNATLMSQGLTVQVGPANADGGNANAIMNGIEVLKISNSVDSLDGEFGVDGRRIGGSNRGTVAAVGFAMMFGAFVGLGAMVIKWHKRPQDWQKRNSFSSWLLPLHAGDTSFMSSKTSMGKSNIYSSSMGLGRFFSFAELQEATKNFDSKNIIGVGGFGNVYLGVIDEGTQVAVKRGNPQSEQGINEFQTEIQMLSKLRHRHLVSLIGYCDENEEMILVYEYMPNGHFRDHLYGKNLPSLSWKQRLEICIGSARGLHYLHTGTTQGIIHRDVKTTNILLDENFTAKVSDFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCARPAINPQLPREQVNLADWAMQWKRKGLLDKIIDPLLVGSINPESMKKFAEAAEKCLADHGVDRPSMGDVLWNLEYALQLQEAFTQGKAEDEIKSTAAVPTSPAPVPTPSSTSDDTPVSRPEVNNNNNSPPEVHAIDDHSGTAMFAQFNNLNGR	867

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi174g00095	867	FunFam	receptor-like protein kinase FERONIA	481	593	-	-
	Sebi174g00095	867	SUPERFAMILY	Protein kinase-like (PK-like)	501	785	IPR011009	-
	Sebi174g00095	867	Gene3D	-	51	201	-	-
	Sebi174g00095	867	Gene3D	-	227	410	-	-
	Sebi174g00095	867	ProSiteProfiles	Protein kinase domain profile.	518	790	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi174g00095	867	MobiDBLite	consensus disorder prediction	802	853	-	-
	Sebi174g00095	867	FunFam	Receptor-like protein kinase FERONIA	594	807	-	-
	Sebi174g00095	867	ProSitePatterns	Protein kinases ATP-binding region signature.	524	546	IPR017441	GO:0005524
	Sebi174g00095	867	Gene3D	Transferase(Phosphotransferase) domain 1	594	812	-	-
	Sebi174g00095	867	Pfam	Malectin-like domain	54	407	IPR024788	-
	Sebi174g00095	867	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	638	650	IPR008271	GO:0004672\|GO:0006468
	Sebi174g00095	867	Gene3D	Phosphorylase Kinase; domain 1	480	593	-	-
	Sebi174g00095	867	PANTHER	OS07G0166700 PROTEIN	504	794	IPR045272	GO:0004714\|GO:0006468
	Sebi174g00095	867	SMART	serkin_6	518	790	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi174g00095	867	CDD	STKc_IRAK	524	788	-	-
	Sebi174g00095	867	FunFam	Putative receptor-like protein kinase	51	201	-	-
	Sebi174g00095	867	MobiDBLite	consensus disorder prediction	821	846	-	-
	Sebi174g00095	867	FunFam	Receptor-like protein kinase FERONIA	225	410	-	-
	Sebi174g00095	867	Pfam	Protein tyrosine and serine/threonine kinase	521	715	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi174g00095	Sebi-Chr174	1606920	1609523	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi174g00095	44	867	Receptor kinase-like Gene Family	AT4G39110	68.459	0.0	1189

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Sebi174g00095		Malectin_like	8.9e-36	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi174g00095	-		-	gmx:100790759	1483