Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi174g00080 ATGGCATCAAGTAATCCATTCTTTGACGATATACGGAGCAAAGCTGATGTAGATCCTCCTCAAAATGAAGAGTCAACAGATGTTAGTGAATTAGTGAATGATCCTGCACAAACTGCTCTTAAACCTAATGGGACTGTTTCAAGCAGTGTCCGTGAGCTTTTAGAGTGCCCTGTATGCCTGAATGCCATGTACCCTCCAATCCATCAGTGTTCAAACGGTCACACGATATGCTCAGGTTGCAAACCCAGGGTCCATAACCGGTGCCCTACTTGTAGGCATGAGCTTGGCAATATTAGATGTCTAGCACTGGAGAAGGTGGCTGCATCTTTGGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATTGGTATATATCCATATTACAGCAAGCTAAAACACGAATCTCAATGTGCATATAGACCCTATAACTGTCCATATGCTGGTTCAGAATGCTCTGTTATGGGTGATATACCCTACCTGGTGGCCCATCTGAAAGACGACCACAAAGTGGACATGCACAATGGTAGCACTTTAACCATCGCTATGTCAAATCAAATCCACAGGAAGTTGAAAATGCCACATGGATGTTAA 591 0.4349 MASSNPFFDDIRSKADVDPPQNEESTDVSELVNDPAQTALKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCAYRPYNCPYAGSECSVMGDIPYLVAHLKDDHKVDMHNGSTLTIAMSNQIHRKLKMPHGC 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi174g00080 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 164 IPR013083 -
Sebi174g00080 196 FunFam E3 ubiquitin-protein ligase SINAT5-like 14 107 - -
Sebi174g00080 196 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 34 188 - -
Sebi174g00080 196 MobiDBLite consensus disorder prediction 22 44 - -
Sebi174g00080 196 MobiDBLite consensus disorder prediction 1 44 - -
Sebi174g00080 196 Pfam Seven in absentia protein family 98 183 IPR018121 GO:0005737|GO:0006511|GO:0007275
Sebi174g00080 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 108 IPR013083 -
Sebi174g00080 196 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Sebi174g00080 196 CDD RING-HC_SIAHs 54 92 - -
Sebi174g00080 196 SUPERFAMILY TRAF domain-like 109 179 - -
Sebi174g00080 196 SUPERFAMILY RING/U-box 48 96 - -
Sebi174g00080 196 FunFam E3 ubiquitin-protein ligase SINAT3 108 164 - -
Sebi174g00080 196 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi174g00080 Sebi-Chr174 1355386 1356518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi174g00080 47 178 C3H Transcription Factor Family AT2G41980 75.758 7.59e-72 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi174g00080 K04506 - gmx:100793457 373.244