Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi174g00079 ATGGCTCCTGTTTACATAGCCTTTTTGCGGTTTATGGGTGATGATAATGAGGCAAAGAATTACAGCTACAGTTTAGAGGTAGGTGGAAATGGGAGGAAGATGATTTGGCAGGGGGTGCCTAGAAGCATCAGGGACAGCCACCGCAAGGTTCGTGACAGTTTTGACGGTCTCATCATTCAGAGAAATATGGCTCTCTTCTTTTCAGGGGGTGATCGGAAGGAATTGAAGCTAAGGGTTACTGGTAGGATTTGGAAAGAACAATGA 264 0.4545 MAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi174g00079 87 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 2 86 - -
Sebi174g00079 87 SUPERFAMILY TRAF domain-like 3 84 - -
Sebi174g00079 87 Pfam Seven in absentia protein family 2 80 IPR018121 GO:0005737|GO:0006511|GO:0007275
Sebi174g00079 87 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 1 80 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi174g00079 Sebi-Chr174 1354534 1354797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi174g00079 1 87 C3H Transcription Factor Family AT2G41980 79.310 1.45e-50 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi174g00079 K04506 - mnt:21406701 180.644