Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi174g00077 | ATGCATCATGCTGGAAACAAGTTTTGCGCTGACTGTGGAACTCCAGAGCCAAAATGGGTATCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCTGGCGTACATAGAAGTCTAGGAGTCCACATATCAAAGGTTGTATCAGTGAAGCTAGATGAATGGACAGATGAACAAGTTGATTCATTAGAGAATTTGGGTGGAAATACATTGTTAAATAAGAAGTATGAAGCTTGCCTCCCAAGTAATATAAAAAAACCAAAACCACATTCTTCCATTGAGGAGCGCTCCGATTATATCAGGAAAAAATATGAGCTGCTACAGTTCATAGAGTGTGATGACAATTTGTCATACCAAATAGTACCATCTCAAGGAAGAAGTTCATCATTGGCTCACATCAATTCTGCTTGCTACAATTCCTTTATGGACAAGAAACTATTTGAGAAGCACCCAACCAAACATCGTATTGGGCATGCATTCAGAAACAGCTGGGGAAGAAAAGATTCTGAGCACAAGTCTTCAAAGAAGAGCACCTCATTGGCAGGTATGGTTGAATTTGTTGGGTTGATTAAGGTTAATGTTGTAAAAGGCACTCACCTGGCAGTTCGAGATGTAATGACCAGTGACCCTTATGTCATCCTTTCTTTGGGTCACCAATCAGTAAAAACACGTGTTATAAAGAACAACTTAAATCCAGTCTGGAATGAAAGCCTAATGCTATCAATTCCAGAGAACATTCCTCCTCTTAAAGTGCTTGTGTATGATAAGGATACATTTTCAACTGATGATTTTATGGGTGAGGCTGAAATAGACATTCAACCTCTAGTTTTAGCTGCAATTGCCTATGAGAAATCTACAATCAATGAGTCCATGCAGCTTGGGAAATTTGTAGCAAGTAAGGATAACACTCTTGTAAGAGATGGTATCATCTCCCTTGATGATGGGAAGATCAAACAGGAAATCTCAGTGAGGCTACAAAATGTTGAGAGAGGTGTGCTGGAGATTGAGCTTGAGTGTGTTCCTCTTACTCAATAG | 1032 | 0.3924 | MHHAGNKFCADCGTPEPKWVSSSLGVFICIKCSGVHRSLGVHISKVVSVKLDEWTDEQVDSLENLGGNTLLNKKYEACLPSNIKKPKPHSSIEERSDYIRKKYELLQFIECDDNLSYQIVPSQGRSSSLAHINSACYNSFMDKKLFEKHPTKHRIGHAFRNSWGRKDSEHKSSKKSTSLAGMVEFVGLIKVNVVKGTHLAVRDVMTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVLAAIAYEKSTINESMQLGKFVASKDNTLVRDGIISLDDGKIKQEISVRLQNVERGVLEIELECVPLTQ | 343 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi174g00077 | 343 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 1 | 116 | IPR001164 | GO:0005096 | |
| Sebi174g00077 | 343 | FunFam | ADP-ribosylation factor GTPase-activating protein AGD12 | 185 | 343 | - | - | |
| Sebi174g00077 | 343 | CDD | C2_ArfGAP | 186 | 330 | - | - | |
| Sebi174g00077 | 343 | Pfam | C2 domain | 188 | 274 | IPR000008 | - | |
| Sebi174g00077 | 343 | PRINTS | HIV Rev interacting protein signature | 25 | 42 | IPR001164 | GO:0005096 | |
| Sebi174g00077 | 343 | PRINTS | HIV Rev interacting protein signature | 6 | 25 | IPR001164 | GO:0005096 | |
| Sebi174g00077 | 343 | PRINTS | HIV Rev interacting protein signature | 46 | 67 | IPR001164 | GO:0005096 | |
| Sebi174g00077 | 343 | Pfam | Putative GTPase activating protein for Arf | 3 | 110 | IPR001164 | GO:0005096 | |
| Sebi174g00077 | 343 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 3 | 109 | IPR037278 | - | |
| Sebi174g00077 | 343 | CDD | ArfGap | 5 | 103 | - | - | |
| Sebi174g00077 | 343 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 184 | 278 | IPR035892 | - | |
| Sebi174g00077 | 343 | Gene3D | Arf GTPase activating protein | 1 | 117 | IPR038508 | - | |
| Sebi174g00077 | 343 | SMART | arf_gap_3 | 1 | 116 | IPR001164 | GO:0005096 | |
| Sebi174g00077 | 343 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 2 | 343 | IPR044518 | GO:0005096|GO:0005543 | |
| Sebi174g00077 | 343 | ProSiteProfiles | C2 domain profile. | 170 | 285 | IPR000008 | - | |
| Sebi174g00077 | 343 | Gene3D | C2 domain | 185 | 342 | IPR035892 | - | |
| Sebi174g00077 | 343 | SMART | C2_3c | 188 | 283 | IPR000008 | - | |
| Sebi174g00077 | 343 | FunFam | stromal membrane-associated protein 1 isoform X1 | 1 | 114 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi174g00077 | Sebi-Chr174 | 1340513 | 1344290 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi174g00077 | 1 | 343 | C2H2 Transcription Factor Family | AT4G05330 | 48.397 | 2.37e-116 | 338 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi174g00077 | K12486 | - | gmx:100789552 | 612.068 |