Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi174g00052 ATGGCGGTTGAACTTGTTTGTGGTGCTCTTCTCTCTTCTTCCTTTCAAGTGGCGTTTGAGAGACTCGCTTCTCGTGAAGTTCTCGACTTCTTTCGAGGAAGAAAACTCAATGAGGAGCTGTTGAACAAGTTGAACATCAAGCTGCTGTCCATCAATGCTGTGCTTGATGATGCAGAACAAAGGCAGATCAGAAATCCAAACGTGAAAGCATGGCTTGTCATGGTCAAAGATGCTGTGTTTGAAGCAGAGGATCTGTTGGATGAAATAGACACTCATGTCTCCAAATCCAAGCTGAAACCTAAATCTCGGTCCATTACTAGCAAGGTACGGAATATCTTTGTTCCCCCTCTTAGTTCATTTCACAAGGGAATTGATTCAAGGATGCAAAAAGTCCTTGACAAGCTAGAATATCTTGCAAAAGAAAAGGATATACTAGGTTTGAAAGAGGCTAGTGTTGGATCAGGTAGTCAAGTGTCACAAAAAATGTCATCAACATCCTTGCTAATAAGTGAAGCTGTTATATATGGCAGAGATGTTGACAAAGAAAATATCTTTAATTGGTTGGTGTCTAACACTGAGAATGATAATAACCAGTTATCTGTAATTTCTATAGTGGGTATGGGTGGGTTGGGAAAGACCACCCTTGCCCAACATTTGTACAATGACCCGAGGATGAAGTTTGAGATCAGAGCTTGGGTCTGTGTTTCAGATGAATTTGATGTTTTCAAGGTAACAAGAGCAATTCTGGAGGCAATCACTGGATCAACCGATGATAGCATAGACCTAAATATGGTTCACGGAAGATTGAAGGAAAAATTGACAGGGAAGAAATTTCTTCTTGTTTTGGATGACGTTTGGAACGAAAAACAAGACCAATGGGAAGCTTTGCAAACTCCTTTGACTTATGGGGCTCAGGGAAGCAAAATTCTTGTCACAACACGCAGTTTGAAAGTTGCTTCAACCATGCGATCAACTCAAACACATCAGCTACAAGAATTACAAGAGGAACACTGCCAAAGATTGTTTGCTAAACATGCCTTCCAAAATGAAAATTCTCAAATAGATCATGAGTTTAAGGAGATTGGTATGAAGATAATTAAAAAATGCAAAGGCTTGCCTCTAGCCTTGAAAACAATTGGAAGTCTCTTAAAAACAAAAACATCTTTGCTAGAATGGGAGAGTATATTGACAAGCGAGATATGGGACTTACCTGAAGGGGGTTGCAATATAATCCCCGCTTTAATATTGAGCTATCATCACCTTCCTCCTCATCTCAAGAGATGCTTTGCTTATTGTTCCTTATTCCCTAAAGACTATCTGTTTCAAAAGGAGGATTTAATCCTATTATGGATGGCTGAAAACTTTCTACAACAAGGCAAGAGTATGATAGCAGTTGGTGAGGAGTACTTCAACGATCTGTTGTCGAGGTCTTTTTTTCAACAATCAAGAGAAGATGAAATGCGTTTTGTGATGCATGACCTTCTCAATGATTTGGCAAAATATGTGAGTGGGGATTTTTGTTGCAGGTTGGATGTTGAAGTGAGAATGATGCCAAAGCAATTTGGAAAATTGAAGAATCTTCAAGTATTGAGTTCATTTTATGTGGGAAAAGATACCGAGTCCAATATTAAGGAATTAGGAGAACTCAATCTTCATGGAAGACTTGAAATTTTGGAGCTGCAGAACGTTGACAATCCGTTAGATGCATTAGCAGCAAATATGAAAAGTAAAACACACCTTGTGGAGTTGGAGTTAGAATGGAGTGAAAAACATGAAGATTCAGAGAAAGAAAGGGAAGTGCTTGAGAAGCTTCAACCTTCCAAACACTTGAAGGAGTTGTCAATCTGGAAATATGGTGGTAAACAATTTCCAGATTGGTTTTGGGATAATTCATTATTATCCTCCTTAACGTTGGTGGACTGTAAATATTGTACCTCGTTGCCTCCACTTGGACTCTTGCCAACTCTCAAGGAATTATCATTTAAAGGGCTCTCTGGAATAAAGGTGATTGGTGCAGAGTTTTATGGGTATGGGAGCAGCTCTTCTTCTATAATTCCATTTCGATCCCTGGAAACCTTGAAATTCGAGGATATGGAGGGATGGGAAGAATGGAAATGTAACACCGTGAAGGGTGCTTTTCCACGTCTTCGGAAGCTTTATATAAGAAAATGTCCACAACTGAAAGGACAGTTGGTAGAGCAACTTTGGGGTGGTGGAAGCTGCGTGGAAGGATCAAAAACTACCGATGACCCAACTATAAACCATTGTCATAATTTTCTTGAAACATTACATATCGCCTCACTAAAATGTGCTTTGGCAATCAACACTACTTGTCTGCGTGAATTGAGAATTGATATTTCAGGAGTGGATGTGGAGTCTTTTCCTGATGAAGGGTTGCTGCCACTCTCTCTTACTTCTCTGTTTATTATAAAATGTCCAAATCTTAAAAAACTAGACTACAAGGGTCTCCGACACCTCTCCTCTCTTAAAGAATTGTCTCTTCATGACTGTCCCAGTCTCGAATGCTTACCAGAGGAGGGTCTCCCCAAATCCATTTCAACTCTACATATTTGGGATTGTTCTTCGCTGCTCAAACAGCGTTGCCAGAATCCAAATGGGGAAGACTGGGGGAAGATTTCTCACATTGATGATGTTGACATCGACTAA 2667 0.3986 MAVELVCGALLSSSFQVAFERLASREVLDFFRGRKLNEELLNKLNIKLLSINAVLDDAEQRQIRNPNVKAWLVMVKDAVFEAEDLLDEIDTHVSKSKLKPKSRSITSKVRNIFVPPLSSFHKGIDSRMQKVLDKLEYLAKEKDILGLKEASVGSGSQVSQKMSSTSLLISEAVIYGRDVDKENIFNWLVSNTENDNNQLSVISIVGMGGLGKTTLAQHLYNDPRMKFEIRAWVCVSDEFDVFKVTRAILEAITGSTDDSIDLNMVHGRLKEKLTGKKFLLVLDDVWNEKQDQWEALQTPLTYGAQGSKILVTTRSLKVASTMRSTQTHQLQELQEEHCQRLFAKHAFQNENSQIDHEFKEIGMKIIKKCKGLPLALKTIGSLLKTKTSLLEWESILTSEIWDLPEGGCNIIPALILSYHHLPPHLKRCFAYCSLFPKDYLFQKEDLILLWMAENFLQQGKSMIAVGEEYFNDLLSRSFFQQSREDEMRFVMHDLLNDLAKYVSGDFCCRLDVEVRMMPKQFGKLKNLQVLSSFYVGKDTESNIKELGELNLHGRLEILELQNVDNPLDALAANMKSKTHLVELELEWSEKHEDSEKEREVLEKLQPSKHLKELSIWKYGGKQFPDWFWDNSLLSSLTLVDCKYCTSLPPLGLLPTLKELSFKGLSGIKVIGAEFYGYGSSSSSIIPFRSLETLKFEDMEGWEEWKCNTVKGAFPRLRKLYIRKCPQLKGQLVEQLWGGGSCVEGSKTTDDPTINHCHNFLETLHIASLKCALAINTTCLRELRIDISGVDVESFPDEGLLPLSLTSLFIIKCPNLKKLDYKGLRHLSSLKELSLHDCPSLECLPEEGLPKSISTLHIWDCSSLLKQRCQNPNGEDWGKISHIDDVDID 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi174g00052 888 Gene3D - 417 501 IPR036388 -
Sebi174g00052 888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 432 IPR027417 -
Sebi174g00052 888 Coils Coil 41 61 - -
Sebi174g00052 888 FunFam Probable disease resistance protein At1g61300 156 327 - -
Sebi174g00052 888 Pfam NB-ARC domain 180 396 IPR002182 GO:0043531
Sebi174g00052 888 SUPERFAMILY L domain-like 485 880 - -
Sebi174g00052 888 Gene3D - 332 416 IPR042197 -
Sebi174g00052 888 Gene3D - 33 122 - -
Sebi174g00052 888 Gene3D Ribonuclease Inhibitor 745 875 IPR032675 -
Sebi174g00052 888 Gene3D Ribonuclease Inhibitor 507 735 IPR032675 -
Sebi174g00052 888 PRINTS Disease resistance protein signature 201 216 - -
Sebi174g00052 888 PRINTS Disease resistance protein signature 369 383 - -
Sebi174g00052 888 PRINTS Disease resistance protein signature 272 286 - -
Sebi174g00052 888 PRINTS Disease resistance protein signature 824 840 - -
Sebi174g00052 888 PANTHER DISEASE RESISTANCE PROTEIN RP 511 724 IPR044974 GO:0006952
Sebi174g00052 888 Gene3D - 155 330 IPR027417 -
Sebi174g00052 888 FunFam Probable disease resistance protein At1g63360 418 501 - -
Sebi174g00052 888 Pfam Rx N-terminal domain 11 103 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi174g00052 Sebi-Chr174 951688 954755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi174g00052 199 502 WRKY Transcription Factor Family AT5G45050 24.272 1.06e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi174g00052 - - pvu:PHAVU_004G015800g 732.25