Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi174g00035 | ATGCCACCGGAGGAACTCGCAGCAGACCACGGAAGCAGTGAAATTTCCGATACAAAGATGGATGATTCATGGGAGAGTATTGAAAGGCCTATTTTCAGAGATATTAGACGCTATTTCTGTCAATACTGTGGCATTTGCAGGTCCAAGAAGACCCTAATTACCAATCACATCAATTCTCTTCACAAGGAGGAGATGGAAAAAGAAGGAATCCAAAGGGATCAAGAAACAGAGGATATTAAATTGAATACTTGTAAGGAATGTGGTGCTAGTTTCAAAAAACCTGCCTACCTGTTGCAGCATATGCAAAGCCATTCGCTTGAGGTAGGGAGACCTCTTGAGAAGCTCCATCAAGGGTGCCTCAGTCACGCTCTGTTCAAAATGAGGTTGGCAAGGCCATACATTTGCACTATTGATGATTGTCAAGCAAGTTACAGAAGAAAGGATCACTTGACTCGTCATCTTCTACAGCATGAAGGGAAAATTTTTAAGTGTCCAATTGAGAATTGCAGCCGTGACTTTGCTTTCAAGGGAAACATGACAAGACATGTCAAGGAGTTCCATAGCAAAGATTCTACCTTGACTGGTTTTAAAGTTAAGCTGGAGTCAGTAGAGGTAGTGTGCTTATATCCTGGGTGTATGAAGCATTTTACTAATGTCCAGTGCCTTAGAGCACACACTAAATCTTGCCATCAATATGTGACCTGTGAAACTTGTGGGAAAAAGCAACTGAAGAATAACATTAAAAGGCACCTTCGTAAGCACAAAAATGGTAGTTCATCAGAGGTGTTTCCTTGTGAATATAAGGGTTGTAGCTGCACATTGTCAAGTAAATCCAATCTTCATAAGCATGTCAAGGCTGTGCACTTGCAAGATAAACCTTTCATGTGTGGCTTTCCCGATTGTGGCATGAGATTTGCTTATAAACATGTAAGAGATAACCATGAAAAATCCGGTTCACATGTTTTTACCCTTGGGGATTTTGAAGAAGCTGATGAACAATTCAGGTCAAGGACAAGGGGAGGGAGGAAGAGAAAGTACCCCACAGTTGAAATGTTAGTTAGGAAGAGAGTTGCTCCACCAAGTCAACTGGAGTTGCTCATGAAGGGTATTGAGTAG | 1116 | 0.4158 | MPPEELAADHGSSEISDTKMDDSWESIERPIFRDIRRYFCQYCGICRSKKTLITNHINSLHKEEMEKEGIQRDQETEDIKLNTCKECGASFKKPAYLLQHMQSHSLEVGRPLEKLHQGCLSHALFKMRLARPYICTIDDCQASYRRKDHLTRHLLQHEGKIFKCPIENCSRDFAFKGNMTRHVKEFHSKDSTLTGFKVKLESVEVVCLYPGCMKHFTNVQCLRAHTKSCHQYVTCETCGKKQLKNNIKRHLRKHKNGSSSEVFPCEYKGCSCTLSSKSNLHKHVKAVHLQDKPFMCGFPDCGMRFAYKHVRDNHEKSGSHVFTLGDFEEADEQFRSRTRGGRKRKYPTVEMLVRKRVAPPSQLELLMKGIE | 371 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi174g00035 | 371 | Gene3D | Classic Zinc Finger | 158 | 202 | - | - | |
| Sebi174g00035 | 371 | Gene3D | Classic Zinc Finger | 127 | 157 | - | - | |
| Sebi174g00035 | 371 | SUPERFAMILY | beta-beta-alpha zinc fingers | 244 | 302 | IPR036236 | - | |
| Sebi174g00035 | 371 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 162 | 192 | IPR013087 | - | |
| Sebi174g00035 | 371 | Pfam | Zinc finger, C2H2 type | 83 | 104 | IPR013087 | - | |
| Sebi174g00035 | 371 | Pfam | Zinc finger, C2H2 type | 133 | 157 | IPR013087 | - | |
| Sebi174g00035 | 371 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 133 | 160 | IPR013087 | - | |
| Sebi174g00035 | 371 | SMART | c2h2final6 | 233 | 254 | IPR013087 | - | |
| Sebi174g00035 | 371 | SMART | c2h2final6 | 38 | 61 | IPR013087 | - | |
| Sebi174g00035 | 371 | SMART | c2h2final6 | 205 | 230 | IPR013087 | - | |
| Sebi174g00035 | 371 | SMART | c2h2final6 | 294 | 320 | IPR013087 | - | |
| Sebi174g00035 | 371 | SMART | c2h2final6 | 162 | 187 | IPR013087 | - | |
| Sebi174g00035 | 371 | SMART | c2h2final6 | 82 | 104 | IPR013087 | - | |
| Sebi174g00035 | 371 | SMART | c2h2final6 | 133 | 157 | IPR013087 | - | |
| Sebi174g00035 | 371 | SMART | c2h2final6 | 263 | 288 | IPR013087 | - | |
| Sebi174g00035 | 371 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 207 | 230 | IPR013087 | - | |
| Sebi174g00035 | 371 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Sebi174g00035 | 371 | PANTHER | ZINC FINGER PROTEIN | 17 | 364 | - | - | |
| Sebi174g00035 | 371 | Gene3D | Classic Zinc Finger | 259 | 324 | - | - | |
| Sebi174g00035 | 371 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 135 | 157 | IPR013087 | - | |
| Sebi174g00035 | 371 | Gene3D | Classic Zinc Finger | 9 | 109 | - | - | |
| Sebi174g00035 | 371 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 38 | 66 | IPR013087 | - | |
| Sebi174g00035 | 371 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 82 | 109 | IPR013087 | - | |
| Sebi174g00035 | 371 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 265 | 288 | IPR013087 | - | |
| Sebi174g00035 | 371 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 263 | 293 | IPR013087 | - | |
| Sebi174g00035 | 371 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 164 | 187 | IPR013087 | - | |
| Sebi174g00035 | 371 | SUPERFAMILY | beta-beta-alpha zinc fingers | 160 | 188 | IPR036236 | - | |
| Sebi174g00035 | 371 | SUPERFAMILY | beta-beta-alpha zinc fingers | 130 | 159 | IPR036236 | - | |
| Sebi174g00035 | 371 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 84 | 104 | IPR013087 | - | |
| Sebi174g00035 | 371 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 296 | 320 | IPR013087 | - | |
| Sebi174g00035 | 371 | SUPERFAMILY | beta-beta-alpha zinc fingers | 36 | 104 | IPR036236 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi174g00035 | Sebi-Chr174 | 687329 | 690036 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi174g00035 | 129 | 323 | C2H2 Transcription Factor Family | AT1G72050 | 40.942 | 3.58e-55 | 182 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Sebi174g00035 | zf-C2H2 | 0.0021 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi174g00035 | K09191 | - | gmx:100801812 | 477.633 |