Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi174g00030 ATGGGGTTGAGAAACCTGGGGCCATTAGGGTCCTTTATTAAAGAAGGATGGGAAAAAGCATTCTATGTTGCGAAGTTCTTCTGTTTTCTACATGTTACCGACAAGTATTTGATCGACCTTGTTCTGTCCGAAGGTCCTAGCATGCTTCCTACGATTGATTTGAAACCAAACGTGTTTCTCGCCGAAAGGATCTCTACCCGATTTGGTAAAGTTGCTTGTGGAGATATTGTTGTCTTGCGTTCACCTCAAAACCCTAGAAAGCATATCACCAAACGCTTGGTTGGAATGGAAGGTGATAGTGTTACATACCTTTCTAGTCCCAAGAACAGTGATAAGCATGAGAATGTTTTGGTTCCCAAGGGTCACGTTTGGGTAGAGGGAGATAACAGGTATAATACCACCGACTCAAGAAATTTTGGTCCTGTTCCTTATGGCCTTATTGAGGGCAGGATATTCTGGAGGGTATGGCCACTTAAAGATTTTGGACCTTTCTGGAAAAAATGA 504 0.4266 MGLRNLGPLGSFIKEGWEKAFYVAKFFCFLHVTDKYLIDLVLSEGPSMLPTIDLKPNVFLAERISTRFGKVACGDIVVLRSPQNPRKHITKRLVGMEGDSVTYLSSPKNSDKHENVLVPKGHVWVEGDNRYNTTDSRNFGPVPYGLIEGRIFWRVWPLKDFGPFWKK 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi174g00030 167 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 11 164 - -
Sebi174g00030 167 SUPERFAMILY LexA/Signal peptidase 37 164 IPR036286 -
Sebi174g00030 167 CDD S26_SPase_I 44 151 IPR019533 GO:0004252|GO:0006465
Sebi174g00030 167 PRINTS Bacterial leader peptidase 1 (S26A) family signature 89 101 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sebi174g00030 167 PRINTS Bacterial leader peptidase 1 (S26A) family signature 118 137 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sebi174g00030 167 PRINTS Bacterial leader peptidase 1 (S26A) family signature 36 52 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sebi174g00030 167 FunFam Inner membrane protease subunit 1 34 163 - -
Sebi174g00030 167 Pfam Signal peptidase, peptidase S26 113 156 IPR019533 GO:0004252|GO:0006465
Sebi174g00030 167 Pfam Signal peptidase, peptidase S26 28 103 IPR019533 GO:0004252|GO:0006465
Sebi174g00030 167 Gene3D Umud Fragment, subunit A 34 166 - -
Sebi174g00030 167 NCBIfam signal peptidase I 112 158 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi174g00030 Sebi-Chr174 505548 506510 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi174g00030 48 164 MADS-box Gene Family AT1G29960 55.556 3.38e-46 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi174g00030 K09647 - cave:132170793 223.402