Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi174g00025 ATGGCTTCTTCAGTTGGAGGCAACGGGAACTCGGGTGTCGAGTGGCACGTGCGTCCTCCGAACCCTAAGAACCCAATCGTCTTCTTCGATGTCACCATCGGTAACATTCCAGCTGGTAGAATCAAGATGGAGCTCTTCGCTGATATTACTCCCAAAACCGCTGAGAATTTCAGGCAGTTCTGCACAGGGGAGTACAGGAAAGCAGGACTTCCTGTTGGTTACAAGGGTTGTCAATTTCACAGAGTGATTAAGGATTTTATGATTCAGGCTGGTGATTTTGTCAAGGGTGATGGTAGTGGATGTGTTTCCATCTATGGACACAAGTTTGATGATGAGAATTTTATTGCGAAACACACTGGGCCTGGTCTTCTATCAATGGCGAATAGCGGGGTAAATACCAATGGTTGTCAGTTCTTTATAACTTGTGCAAAATGCGATTGGCTTGACAACAAGCATGTCGTTTTTGGGAGAGTGCTTGGAGATGGTCTTTTGGTTGTCAGGAAGATTGAGAATGTGGCAACTGGACCCAACAACCGGCCAAAATTAGCTTGCGTCATCGCTGAATGCGGTGAAATGTGA 579 0.4611 MASSVGGNGNSGVEWHVRPPNPKNPIVFFDVTIGNIPAGRIKMELFADITPKTAENFRQFCTGEYRKAGLPVGYKGCQFHRVIKDFMIQAGDFVKGDGSGCVSIYGHKFDDENFIAKHTGPGLLSMANSGVNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVIAECGEM 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi174g00025 192 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 74 91 IPR020892 GO:0003755|GO:0006457
Sebi174g00025 192 FunFam Peptidyl-prolyl cis-trans isomerase 14 192 - -
Sebi174g00025 192 PIRSF Peptidylpro_ismrse 14 192 IPR024936 GO:0003755
Sebi174g00025 192 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 29 190 IPR002130 GO:0000413|GO:0003755
Sebi174g00025 192 SUPERFAMILY Cyclophilin-like 15 192 IPR029000 -
Sebi174g00025 192 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 27 192 - -
Sebi174g00025 192 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 28 191 IPR002130 GO:0000413|GO:0003755
Sebi174g00025 192 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 137 IPR002130 GO:0000413|GO:0003755
Sebi174g00025 192 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 79 91 IPR002130 GO:0000413|GO:0003755
Sebi174g00025 192 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 137 149 IPR002130 GO:0000413|GO:0003755
Sebi174g00025 192 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 45 60 IPR002130 GO:0000413|GO:0003755
Sebi174g00025 192 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 150 165 IPR002130 GO:0000413|GO:0003755
Sebi174g00025 192 Gene3D - 14 192 IPR029000 -
Sebi174g00025 192 CDD cyclophilin_ABH_like 25 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi174g00025 Sebi-Chr174 429723 438511 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi174g00025 21 190 U-box Gene Family AT5G67530 41.279 3.92e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi174g00025 K09567 - zju:107428673 387.882