Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi174g00016 ATGGAAGAAGCCAAGCCTTCGGTTGCCTCGGTCGATAATGGCGACCAAGTCGAGTCTCGGTTCGCCCAGTTTTGCCAGAATGGGCTAGCATTGGATGAAAAAAGCTGTAAAGAAGCAACGAATCTCTTTGGAGAGACCAAACATCTTCTACAGACAAATGTTTCATCAATGGGGAATGGAACGTCTGAAGAAGCCGAGCGGTACTGGTTTGCTTTTATTATATACTCTGTCAAGAGATTGACTCAGAGAAATGAGGAGAGTGGGACAGAAGAAACTGAGAACACCGGGCTTACCTTGTGTTGTATATTGAGAGCAGCTAAGCTGAACATTGGAGATTTTTTTAAAGAACTTCCTCAGTATGTTGTTAAGGCTGGTCCACTTATAAGTAATCTATATGGCGCAGATTGGGAAAACAGGCTTGAGGCGAAGGAGATGCATGCAAACGCTATTCACTTGAAGATTCTTAGCAAGTACTATAAACGTGTATTTGGAGAGTTCTTCGTGTCAACTGATGCAAATGTTGAAAAGAACTCATCTGTTACTGTTCATGCATCCCAATACCATCGCTTTGGATGGCTACTTTTCTTGGCACTTCGTGTACATGCTTTCAGCCGTTTCAAAGATTTGGTGACTTGCACCAACGGTTTAATTTCAATTTTGGCCATCTTAGTTATTCATGTTCCTGCTCGTTTTCGGAATTTCAACATTCTCGACTCTTCACGCTTTGTTAAGAAAAGTAGCAAAGGTGTGGACCTCCTTGCTTCACTTTGCAACATATATAACACTTCAGAAGATGAGTTGAGGAAAACCATGGAGAAAGCCAATAATTTAATAGCAGATATATTGAAGAAGAAGCCCTGTTTGGCGTCTGAATGCGAAACTGAAAACCTAGAGAATTTTGATAGAGATGGTTTGACCTATTTTAAAGATCTAATGGAGGAATCAGCTCTGCTATCTAGTTTAAATATCTTAGAAAAAGATTATGATTACATGATTCGCAACAAGGGTGAACTGGATGAGAGGTTATTCATTAATGAAAATGACAGCCTGCTAGCTTCAGGAAGCTTGTCTGGCGGTTCTGTTTCAGCAGGTGGTGTAAAGAGGAAATTTGATTCAATGGCATCACCTGCTAAGACCATTACAAGTCCACTCTCACCCCACCGCTCTCCTGCATCCCATGCCAATGGCATTCGAGGTAGTGTGAATTCAAAGATGGCAGCTACCCCTGTGAGCACAGCAATGACTACTGCAAAGTGGCTTCGTACTGTCATTTCTCCACTTCCATCAAGGCCCTCGCAAGAGCTAGAGCGATTCTTGACATCATGTGACAAGGATGTAACAAGTGATGTTGTTCACAGAGCGCAGATTATATTGCAGGCTATATTTCCTAGTAGTCCTCTCGGGGAACGATGTGTAACTGGAAACCTGCAAAGCGCAAATCTCATGGACAATATATGGGCGGAACAGCGAAGATTAGAAGCACTAAAGTTATACTATAGGGTATTGGAAGCAATGTGCAGAGCAGAGGCTCAGATACTTCATGCAACTAATTTAACCTCGCTACTAACTAATGAGAGGTTCCATAGGTGTATGCTTGCATGTTCTGCAGAATTAGTCCTGGCAACTCACAAGACTGTAACAATGTTGTTCCCTGCAGTTCTTGAAAGGACTGGAATTACAGCTTTTGATCTTAGCAAGGTGATTGAAAGTTTCATTAGACACGAAGAGTCCCTCCCAAGAGAGTTGAGGCGACATCTGAATTCATTGGAAGAACGACTTTTGGAGAGCATGGTATGGGAAAAGGGTTCCTCAATGTATAATTCTTTGGCAGTTGCTAGACCTGCTCTTTCTGCGGAAATCAATCGTCTTGGACTGTTAGCTGAACCAATGCCATCATTGGATGAAATTGCAATGCATATTAACTTCTCTTGTGGAGGGCTACCTCCTGTGCCACCACTGCCTAAGCTTGAGACTTCACCAATGAAAGATCGGCTTCTTCCCTTCAGCAACCTTAAGTCAAAGCTACCACCACCTCCTTTGCAGTCAGCATTTGCCAGTCCAACAAAGCCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATCAACATCTTTTTTGGCAAGATCATTAAGTTGGGAGCTGTCAGAATCAGTGGCATGGTTGAAAGGCTACAATTATCCCAGCAGATAAGGGAGAATGTATACTGTCTTTTCCAGCGAATCCTAAATCAATGGACATCTCTCTTCTTCAACCGCCATATTGACCAAATCATTTTGTGTTGCTTCTATGGTGTTGCAAAGATTTCTCAAATGAACCTAACTTTTAGGGAGATCATATACAACTATAGAAAACAACCACAATGCAAACCGCAAGTTTTTCGTAGTGTCTTTGTTGATTGGTCATTGGCACGCCGTAATGGGGCATGTAAACAGAGAACAGGACAGGAGCATGTTGACATCATTACATTTTACAATGAGATATTCATTCCCTCTGTAAAGCCACTGCTGGTTGAACTTGGCCCTGGTGGAGCAACTATGAAAAGCGACCAAATACCTGCAGTTAATAATAAGAATGATGGCCATTTAGTTCAGTGTCCTGGGTCTCCTAAAATATCACCTTTCCCAAACCTTCCTGATATGTCTCCAAAAAAAGTGTCTGCCACACACAATGTATATGTCTCTCCATTACGATCGTCTAAGATGGATGCCCTAATATCACATAGCTCAAAAAGCTATTATGCATGTGTTGGGGAAAGCACCCATGCATACCAGAGCCCTTCAAAAGATCTGACTGCCATCAATAACCGCTTGAATGGCAACCGGAAGGTCAGAGGTACCCTCAATTTTGATGATGTTGATGCGGGTTTGGTTAGTGATTCTATGGTGGCAAATAGTCTCTATCTGCAGAATGGAAGTTGTGTATCATCGTCAGGTGCACCATTGAAGTCTGAGCAACCTGACTCTTAA 2973 0.4252 MEEAKPSVASVDNGDQVESRFAQFCQNGLALDEKSCKEATNLFGETKHLLQTNVSSMGNGTSEEAERYWFAFIIYSVKRLTQRNEESGTEETENTGLTLCCILRAAKLNIGDFFKELPQYVVKAGPLISNLYGADWENRLEAKEMHANAIHLKILSKYYKRVFGEFFVSTDANVEKNSSVTVHASQYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILVIHVPARFRNFNILDSSRFVKKSSKGVDLLASLCNIYNTSEDELRKTMEKANNLIADILKKKPCLASECETENLENFDRDGLTYFKDLMEESALLSSLNILEKDYDYMIRNKGELDERLFINENDSLLASGSLSGGSVSAGGVKRKFDSMASPAKTITSPLSPHRSPASHANGIRGSVNSKMAATPVSTAMTTAKWLRTVISPLPSRPSQELERFLTSCDKDVTSDVVHRAQIILQAIFPSSPLGERCVTGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPALSAEINRLGLLAEPMPSLDEIAMHINFSCGGLPPVPPLPKLETSPMKDRLLPFSNLKSKLPPPPLQSAFASPTKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQMNLTFREIIYNYRKQPQCKPQVFRSVFVDWSLARRNGACKQRTGQEHVDIITFYNEIFIPSVKPLLVELGPGGATMKSDQIPAVNNKNDGHLVQCPGSPKISPFPNLPDMSPKKVSATHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGTLNFDDVDAGLVSDSMVANSLYLQNGSCVSSSGAPLKSEQPDS 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi174g00016 990 FunFam Retinoblastoma-related protein 1 187 345 - -
Sebi174g00016 990 SMART RB_A_2 408 609 IPR002720 GO:0005634|GO:0051726
Sebi174g00016 990 FunFam Retinoblastoma-related protein 1 661 871 - -
Sebi174g00016 990 Coils Coil 260 284 - -
Sebi174g00016 990 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 15 988 IPR028309 GO:0006357|GO:0051726
Sebi174g00016 990 CDD CYCLIN_AtRBR_like 704 839 - -
Sebi174g00016 990 Gene3D - 669 859 - -
Sebi174g00016 990 Gene3D - 187 345 - -
Sebi174g00016 990 Pfam Retinoblastoma-associated protein B domain 704 835 IPR002719 GO:0005634|GO:0051726
Sebi174g00016 990 SUPERFAMILY Cyclin-like 416 611 IPR036915 -
Sebi174g00016 990 SMART DUF3452_2 80 226 IPR024599 -
Sebi174g00016 990 Gene3D - 411 599 - -
Sebi174g00016 990 SUPERFAMILY Cyclin-like 702 877 IPR036915 -
Sebi174g00016 990 MobiDBLite consensus disorder prediction 380 399 - -
Sebi174g00016 990 Pfam Domain of unknown function (DUF3452) 91 226 IPR024599 -
Sebi174g00016 990 FunFam Retinoblastoma-related protein 1 411 599 - -
Sebi174g00016 990 Pfam Retinoblastoma-associated protein A domain 408 609 IPR002720 GO:0005634|GO:0051726
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi174g00016 1 990 Core Cell Cycle Gene Families AT3G12280 68.610 0.0 1369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Sebi174g00016 RB_A 1e-64 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi174g00016 K04681 - gmx:100779266 1733.77