Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi173g00114 ATGTCTCGCAGAATAATATCATTATATGAGATTGTGAGTGGTGGAGTAGATTGGAAAATTAGGGTGAAAGTAATCAGATTATGGAACGGAACGGATTTTGAAGATCCAAGTATTAAAAAAAGTATTGAGATGGTTTTTCTTGATGAAAAGGGTACTCGGATGCCCTGTATTATTAAAAAAGCTTTAATGGCTACTTTTGAGAATGAATTCAAAGAAGGGTCGTGTTATCTTATCCAGAATATTATGATTGCTCATAATGAGGGAAGATTTAAGACTACTTCTCATAAGTTCAAATTGAGTTTTATGGCAAATACAAGGGTTCAACAGATAAATTGTGAAAGTTTTCCTATAAATGCATATCAATTTGTTCCTTTCGATCAGATTAATGATGGGCGTCCTACCAACTTATTAATAGATGTTATAGGTCATATTGTGCAGAAAGATGAGATTAAAGTGAATTCAAAGAATAACAACACAACAAAGCGCATAGAATTGGTTTTGGAAGAATTAGAGTAA 516 0.3236 MSRRIISLYEIVSGGVDWKIRVKVIRLWNGTDFEDPSIKKSIEMVFLDEKGTRMPCIIKKALMATFENEFKEGSCYLIQNIMIAHNEGRFKTTSHKFKLSFMANTRVQQINCESFPINAYQFVPFDQINDGRPTNLLIDVIGHIVQKDEIKVNSKNNNTTKRIELVLEELE 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi173g00114 171 Gene3D - 114 171 IPR012340 -
Sebi173g00114 171 Pfam Domain of unknown function DUF223 43 129 IPR003871 -
Sebi173g00114 171 SUPERFAMILY Nucleic acid-binding proteins 8 109 IPR012340 -
Sebi173g00114 171 Gene3D - 2 110 IPR012340 -
Sebi173g00114 171 CDD RPA1_DBD_A_like 19 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi173g00114 Sebi-Chr173 1552543 1553211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi173g00114 1 158 Core DNA Replication Machinery Family AT5G08020 25.767 5.89e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi173g00114 - - tpra:123892276 130.954