Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi173g00052 ATGAAGGTGATATCCTTATGTCAACAAGGAGCCGAAGCTATATGCATCATATCTGCGAATGGTGTAATTTCAAATGCTAAACTTCGTGAGACTGCTTCTTCTGAGGATACTTCGACCTATGAGGGGCTATTTGAGATACTTACTTTGTGTGGATCATTCATTCTTGGCAGCAATGAAGGAGCATCAGGTGGGATGAGTGTCTCACTAGCTACTCAAGATTGTCGGGTAATAAGTGGTGGAGTTGCAGGCCTTCTCATAGCTGCCAGTCCTGTAAATGTGGTGGTGGGACGTTTTCTACCAGCATGA 306 0.4444 MKVISLCQQGAEAICIISANGVISNAKLRETASSEDTSTYEGLFEILTLCGSFILGSNEGASGGMSVSLATQDCRVISGGVAGLLIAASPVNVVVGRFLPA 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi173g00052 101 ProSiteProfiles PPC domain profile profile. 1 101 IPR005175 -
Sebi173g00052 101 Pfam Plants and Prokaryotes Conserved (PCC) domain 2 98 IPR005175 -
Sebi173g00052 101 CDD DUF296 2 98 IPR005175 -
Sebi173g00052 101 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 100 IPR039605 GO:0003680
Sebi173g00052 101 SUPERFAMILY AF0104/ALDC/Ptd012-like 7 100 - -
Sebi173g00052 101 Gene3D - 1 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi173g00052 Sebi-Chr173 756581 757960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi173g00052 1 99 AT-hook Motif Nuclear Localized (AHL) Family AT5G51590 58.824 1.22e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi173g00052 - - ccaj:109801852 127.487