Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi173g00038 ATGCTCCCAAAATGCACCACCATAGAACACGTGAATCAACTTCATGCACGCATGATAACAACAGGGTTCATAAAAAACACTGCCCTCACCACCAGACTCGTCCTCACTTTCATTTCTTCACCCCACGAGCCTCTTGTTGAGTTTGCTCGCTACATCTTCTTCAAGCACCATGCTTTTCACTTCTCCCATAAGAAAGATGACCCTTTTCTTTGGAATGCTGTGATCAGGTCTTACTCTCATGGTTTTGACCCTCAAGGGGCTCTGCTTTTGCTCTGTTCGATGCTTGAAAATGGGGCGCAGCAAGCAGAGAGCGTTGTTCATCTCAATCACTCACCATGGGTAGAATGCACTCTCGCGGCTCTTCCATATAAGAGAACTCCACCCAGCTGGCTCAAGATCTCTTCTCAGGATGTTGAGGAGAACATCTGCAAGTTTGCCAAGAAAGGTCTGACTCCATCTCAAATTGGTGTGATTCTTCGTGACTCTCATGGAATTGCTCAGGTGAAGAGTGTCACTGGAAGCAAGATTTTGCGCATATTGAAGGCACATGGGCTTGCTCCTGAAATACCCGAAGATCTGTATCACCTGATCAAGAAGGCTGTCTCAATTAGGAAGCACTTGGAGAGGAATAGGAAGGACAAAGATTCTAAATTCAGGTTAATTTTGGTTGAGAGTAGGATTCACCGCCTTGCCCGTTACTACAAGAAGACAAAGAAACTTCCACCTGTGTGGAAATATGAATCAACAACTGCCAGCACCCTTGTGGCTTAG 771 0.4578 MLPKCTTIEHVNQLHARMITTGFIKNTALTTRLVLTFISSPHEPLVEFARYIFFKHHAFHFSHKKDDPFLWNAVIRSYSHGFDPQGALLLLCSMLENGAQQAESVVHLNHSPWVECTLAALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi173g00038 256 FunFam 40S ribosomal protein S13 188 256 - -
Sebi173g00038 256 SMART Ribosomal_S15_2 175 254 IPR000589 GO:0003735|GO:0005840|GO:0006412
Sebi173g00038 256 Gene3D - 140 187 - -
Sebi173g00038 256 Pfam Ribosomal S13/S15 N-terminal domain 120 165 IPR012606 GO:0003735|GO:0005840|GO:0006412
Sebi173g00038 256 PANTHER RIBOSOMAL PROTEIN S15P/S13E 118 256 IPR023029 -
Sebi173g00038 256 Gene3D - 188 256 - -
Sebi173g00038 256 CDD Ribosomal_S15p_S13e 175 248 IPR000589 GO:0003735|GO:0005840|GO:0006412
Sebi173g00038 256 ProSitePatterns Ribosomal protein S15 signature. 203 233 IPR000589 GO:0003735|GO:0005840|GO:0006412
Sebi173g00038 256 FunFam 40S ribosomal protein S13 140 187 - -
Sebi173g00038 256 SUPERFAMILY S15/NS1 RNA-binding domain 171 247 IPR009068 -
Sebi173g00038 256 Hamap 30S ribosomal protein S15 [rpsO]. 108 254 IPR023029 -
Sebi173g00038 256 Pfam Ribosomal protein S15 179 249 IPR000589 GO:0003735|GO:0005840|GO:0006412
Sebi173g00038 256 SMART Ribosomal_S13_N_2 120 165 IPR012606 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi173g00038 Sebi-Chr173 605709 611378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi173g00038 110 256 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 89.116 1.12e-91 265