Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi173g00033 ATGGCTAGTTCTGGTTGCAATTTACTAGTAGTGGCCCTTATCTTTGGTACTGCCTTTTATGTCTTGTTCCCACAAGCTGCTGTTGTTGCCACCAACATAGTAGCTTCTAATTCCTCATCCATAAATGAGGAACAAAAGGCTTTGCTCCAGAGCAGGTGGGGAGGAGGCAAAAATATCTCAAAATATTGTAAATGGAATGGTATTGTTTGTGATGAAGTTGGAAGTATAAAAGAGATTTCAACTAGCAATTATTTTTATGTTCCTCCAACAGAATTGCAGATTCAGAACTTCAATATGACAGCATTCCCCAATTTAATCCGTTTAGAACTTAGTGGATTGGGACTCAAAGGAAGCATCCCCACAGAAATAAGCTCTCTTACAAAGCTCAGGTATCTTGACCTGTCTTCCAATTGTCTTCAAGGTGAGTTGCCTAGTTCACTTTCAAATCTCACTCAACTTGAGACACTTGATATTTCCAACAATTTTCTTACTGGTGTCATCCCTCCGACTTTGGGTCAATTAAAATATTTGACAAAACTTTCCCTTGACTCAAACCAAATTGAAGGTCCCATCCCTTCAGAACTATGGAATTCAAAAAGTTTAGAGCAACTAACTCTTTCAAACAACTTACTCAATGGTTCAATCCCTTCTACTTTAGAGCACTTGGCCCATCTCAAAGTTTTAGATCTTTCTCACAATAAGATTCTCGGTGTTATACCAGAAGGGATATCTTCACTAACACAACTGACAAAAGTTAATTTATCTTGGAATCAAATTACTGGTTTCATCCCATCTGGGATTGGACAAATCCCAGTACTAGAAGTTTTAGATATTTCCAACAATAGGCTTGAGGGACCCATCCCATATGTAATATTGATGATTTGCTCTGCTGTCAGCAGCATGCTCATTTCATGTTGGGGAATTCAAGTTTTCTGTCCCCCACCTTGTGAGTCTGAAAACAAGGAAAGAAAAAGGAATGGAGACATGATCTCAATTTGGAACCATGATGGTAAAATTGCATTTGAAGACATAATTAAAGCCACGGAGGACTTTGATATGAGGTATTGCATAGGAACAGGTGCTTATGGAAGTGTGTACAAAGCACAACTTCCCAGTGGTAGAATTGTTGCACTAAAGAAGCTTCACAAAGCAGAATCTGAAAACCCATCCTTTTACAAGAGTTTTTGTAATGAGGTTGAGATCTTGACAAAAATTCGTCATCGCAACATCATTAGGCTCTATGGTTTTTGCTTGCATAACAAGTGCATGTTTTTGGTGTATGAGTATATGGAAAGGGGAAGCTTATTTTACAACTTGTCCAATGATGTGGAAGCTCAAGAGTTGAATTGGAGCAAGAGGATAAACATTGTTAAAGAGATAGCCTATGCCCTGTCTCACATGCATCATCATTGTGTTCAACCAATTGTTCATCGAGACGTGACTAGTAACAATGTTTTGTTGAATTCAGAGTTACAAGCTTTTGTCTCAGACTTTGGCATAGCAAGACTTCTTAATTGCCATTCATCTAATCAAAGTATGCTTGTTGGTACTCGTGGATATGTTGCTCCAGAATTGGCTTACACTTTGACTGTGACAACAAAAGTAGATGTTTATAGCTTTGGAGTGGTGGCTTTAGAAACAATGATGGGTAGACATCCAGCTGAATTGATCTCCTCTTTGTCAGAACCATCTACTCAAAACAAGAAGCTGAAAGATATATTGGACTCACGTATTCCACTACCATTTTTTCGTAAAGAGATGCAAGATATTGTGCTTGTGGTAACATTAGCATTAGCATGCTTGTGCCCCGACCCAAAATCCAGACCATCAATGCAGGAAGTAGCTAATGAGCTTATAGTTTGCAAGCCACCATTGCTTTGGCATTTTTATGACATTTCAATCCATCAATTGATGAAACAAAAGATATATGTAATAGCGTCTCTAGTAGGGGGAGCTGCTGTGGGAACAGTATTTGGAGAATTGTTGAAGGCGGTTTTGGAAATAAGAGACAAGGCCGTTATGTTCAAACAAACTTTGGCGAACCTCAGATGCACTCTAATAACAGTTGCTCCAATTATGAAAGAGATAGAGCAGCACAACATCGACCTAGGCCGTCCAAAAGAGGATCTTGAATCTCTGATAAGAGAAATGGAAGAGGGCACAAATCTTGTGTCCAAATGTGCAAAAATCCACAGATTAAATTTTATGGCCAGGGCTCGATACCAGGAGCGGCTAGAGGCATTAATGGATTCACTTGTAAGGTTTTTCATCATTGATATGCAAGCTCAGGCTACTAGAGATCAAAAGGAGACCCTGCTTAAAGTTAGAAAAATACTTAGCGCGGTCAATAAATTTCCTATGGTCAACGCAGAGGACACAACTGTTTCATCTTCTTACTTTTCCGCTGTGTCTCTGCCTGGGGACATGGAAACCAATTATAGTGAGGAAGCCATGGAACATATCATCGCTGTGAATGAGTCAGATTCAGAAACCCCTCACTCAACCGCTGAACAAGCCATGGAGCCTCTCCCTAGCATCGCCGATGAAAAATGGTACATGAATATTCTGGAAGCAGACAAAACACAGCCCCCAAAGAAAACTGAAGACGGGAAGCTATATACCCCGGCTGCTGTTGATCTATTCATGATACTTGGAGAGCAAGTTCAAATTGTTCGAGATAATAGCACTGATGTCATGTTATACAGAATCTCCTTGACAACCATTCAGGTGATGATTGATTTTCAAGCAGCCGAAAAGAAGAGACTTGAAGAACCAGCTTCTGAAATTGGTCTGGAACCTTTATGTGCTATGATTAACAACAATTTGCGTTGCTATGACCTTGCAATGGAGCTAAGTAATAGCATCATAGAAGCCCTTCCACGGAACTACGCCGAGCAGGTTAATTTTGAAGATAACTGTAAGGGTTTTCTTGAGGTTGCTAAGGAAGCTGTGCATCAAACTGTTAATGTAATATTTGAAGACCCTGGTGTCCCAGAGTTGCTGGTTAAACTATACCAGAAAGAATGGAGTGAGGGTCAGGTTACTGAGTACTTGGTTGCAACATTTGGCGATTATTTTACTGATAAAAATTACATCAAGGAAGAAACTATTGAACGAATGAGGCTAGATGAGGAGATTATAATGGACTTTTTTAGGGAACACATCAGTGTTTCTAAAGTTGAAAAAAGAGTGAGTGTACTTAGTGACTTGAGGGGGCTTGCTTCAGCAGAGAGCCTGGATACCTTCACACTCATCTATACAAATATACTTGAACATCAACCTGACTGCCCGCCTGAAGTTGTGGAGAAACTTGTTGGTCTACAAGAAGGAATTCCTCGGAAGGATGCCAAGGAGGTCATACAAGAATGCAAAGAGATATATGAAAATTCTCTTGTTGATGGAAGACCTCCAAAGGCTGGTTTTGTTTTTGGAAAAGTGAAGTGCTTAACAGCGTCAAAGGGAGGGATTTGGCGTAATATCCTTCCCTTGTTTATATAG 3498 0.3988 MASSGCNLLVVALIFGTAFYVLFPQAAVVATNIVASNSSSINEEQKALLQSRWGGGKNISKYCKWNGIVCDEVGSIKEISTSNYFYVPPTELQIQNFNMTAFPNLIRLELSGLGLKGSIPTEISSLTKLRYLDLSSNCLQGELPSSLSNLTQLETLDISNNFLTGVIPPTLGQLKYLTKLSLDSNQIEGPIPSELWNSKSLEQLTLSNNLLNGSIPSTLEHLAHLKVLDLSHNKILGVIPEGISSLTQLTKVNLSWNQITGFIPSGIGQIPVLEVLDISNNRLEGPIPYVILMICSAVSSMLISCWGIQVFCPPPCESENKERKRNGDMISIWNHDGKIAFEDIIKATEDFDMRYCIGTGAYGSVYKAQLPSGRIVALKKLHKAESENPSFYKSFCNEVEILTKIRHRNIIRLYGFCLHNKCMFLVYEYMERGSLFYNLSNDVEAQELNWSKRINIVKEIAYALSHMHHHCVQPIVHRDVTSNNVLLNSELQAFVSDFGIARLLNCHSSNQSMLVGTRGYVAPELAYTLTVTTKVDVYSFGVVALETMMGRHPAELISSLSEPSTQNKKLKDILDSRIPLPFFRKEMQDIVLVVTLALACLCPDPKSRPSMQEVANELIVCKPPLLWHFYDISIHQLMKQKIYVIASLVGGAAVGTVFGELLKAVLEIRDKAVMFKQTLANLRCTLITVAPIMKEIEQHNIDLGRPKEDLESLIREMEEGTNLVSKCAKIHRLNFMARARYQERLEALMDSLVRFFIIDMQAQATRDQKETLLKVRKILSAVNKFPMVNAEDTTVSSSYFSAVSLPGDMETNYSEEAMEHIIAVNESDSETPHSTAEQAMEPLPSIADEKWYMNILEADKTQPPKKTEDGKLYTPAAVDLFMILGEQVQIVRDNSTDVMLYRISLTTIQVMIDFQAAEKKRLEEPASEIGLEPLCAMINNNLRCYDLAMELSNSIIEALPRNYAEQVNFEDNCKGFLEVAKEAVHQTVNVIFEDPGVPELLVKLYQKEWSEGQVTEYLVATFGDYFTDKNYIKEETIERMRLDEEIIMDFFREHISVSKVEKRVSVLSDLRGLASAESLDTFTLIYTNILEHQPDCPPEVVEKLVGLQEGIPRKDAKEVIQECKEIYENSLVDGRPPKAGFVFGKVKCLTASKGGIWRNILPLFI 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi173g00033 1165 Gene3D Ribonuclease Inhibitor 33 191 IPR032675 -
Sebi173g00033 1165 Gene3D Ribonuclease Inhibitor 192 299 IPR032675 -
Sebi173g00033 1165 PANTHER LEUCINE RICH REPEAT KINASE 2 98 622 - -
Sebi173g00033 1165 Pfam Leucine rich repeat 200 259 IPR001611 GO:0005515
Sebi173g00033 1165 ProSiteProfiles Protein kinase domain profile. 351 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi173g00033 1165 ProSiteProfiles RPW8 domain profile. 643 794 IPR008808 -
Sebi173g00033 1165 Gene3D - 1029 1137 IPR042532 -
Sebi173g00033 1165 SMART LRR_typ_2 150 174 IPR003591 -
Sebi173g00033 1165 SMART LRR_typ_2 126 149 IPR003591 -
Sebi173g00033 1165 SMART LRR_typ_2 246 270 IPR003591 -
Sebi173g00033 1165 SMART LRR_typ_2 222 245 IPR003591 -
Sebi173g00033 1165 SMART LRR_sd22_2 222 245 - -
Sebi173g00033 1165 SMART LRR_sd22_2 126 152 - -
Sebi173g00033 1165 SMART LRR_sd22_2 174 206 - -
Sebi173g00033 1165 FunFam Leucine-rich repeat receptor-like protein kinase 430 625 - -
Sebi173g00033 1165 Gene3D Phosphorylase Kinase; domain 1 316 429 - -
Sebi173g00033 1165 PRINTS Leucine-rich repeat signature 153 166 - -
Sebi173g00033 1165 PRINTS Leucine-rich repeat signature 222 235 - -
Sebi173g00033 1165 ProSitePatterns Tyrosine protein kinases specific active-site signature. 475 487 IPR008266 GO:0004672|GO:0006468
Sebi173g00033 1165 FunFam Nuclear pore complex protein NUP107 30 193 - -
Sebi173g00033 1165 Pfam Exocyst complex component Sec6 1033 1145 IPR010326 GO:0000145|GO:0006887
Sebi173g00033 1165 Pfam Exocyst complex component Sec6 850 1030 IPR010326 GO:0000145|GO:0006887
Sebi173g00033 1165 Pfam Protein kinase domain 357 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi173g00033 1165 FunFam Leucine-rich repeat receptor protein kinase MSP1 316 429 - -
Sebi173g00033 1165 SUPERFAMILY L domain-like 62 311 - -
Sebi173g00033 1165 SUPERFAMILY Protein kinase-like (PK-like) 331 620 IPR011009 -
Sebi173g00033 1165 Gene3D - 848 998 - -
Sebi173g00033 1165 Gene3D Transferase(Phosphotransferase) domain 1 430 623 - -
Sebi173g00033 1165 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524
Sebi173g00033 1165 ProSiteProfiles Leucine-rich repeat profile. 128 151 IPR001611 GO:0005515
Sebi173g00033 1165 FunFam Leucine-rich repeat receptor protein kinase EMS1 215 309 - -
Sebi173g00033 1165 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 646 777 IPR008808 -
Sebi173g00033 1165 Pfam Leucine Rich Repeat 128 150 IPR001611 GO:0005515
Sebi173g00033 1165 Pfam Leucine Rich Repeat 152 172 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi173g00033 Sebi-Chr173 566991 577445 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi173g00033 105 523 Receptor kinase-like Gene Family AT4G08850 40.254 5.31e-95 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi173g00033 Pkinase 7.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi173g00033 - K06110 vra:106773464 760.755