Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi173g00015 ATGGCCAGCACTTGTGCCACCGCTTTCCTCCTTCTCCTCCTTGCCATGGCCACTACCACCACCTTTTGCCTCCAAGAAATGGAGCTGCTCCATATGGCCCAAGCCCAAGTTTCACAGGCCAAGAATTGGGTTGGGAACTCTGTGAGATTGCATGGCTTAGGAAGCCTGCAGAGCCTTAATTCAGATCAAAGTGGTGTTCATAACCAAACTAGTACTACTGTTGTGGCTCTAAGAGATTGTGCCGAGCTCTATGAGGAGAGTGAGTCTAGGCTCTCTCACATGGTCTCTGACAATAGTAATTACACCAAAGAAGATGCACTTACTTGGGACAAAGGGTATGTTGAAGCTCATGATCAGGTTTTGGGTAGAAACTTGACCATGTTGCTTGGGCAAGCTCTTGTTTTGTATTCAAAGCACAAAGGCAAAGGCAAAGGACCACCTCAGAGAACAGTATCCAAAGCAAATGCTGGTCTCTTAGAATCATGGAGTCCAGCAAGCTACAAGGCAGACTTCACAGTGGCACAGGATGGTTCAGGCAGCCACAGAACAATCAAAGAAGCAGTAGATGCACTGGTTTCAATGGGGCACAACCGTCCTGGTAGGGCAGTTATACATGTAAAATCAGGGGTCTACCATGAGAAAGTTGAGATTGGAAGCAAGCTACACAATGTGATGTTTGTAGGAGATGGCATAGACAGAACTATCATCACTGGCAACAGAAATGTTGTTCAGGGCTCTTCCACTCTTGGCTCTGCCACATTTGATGTATCTGGGGATGGATTTTGGGCTAGAGATATGACATTTGAGAACACTGCAGGCCCTGAAAAGCACCAAGCAGTGGCACTTAAGGTAAGCTCTGACTTATCAGTGTTCTATAGGTGCAGCTTCAAAGGTTACCAAGACACTCTTTATGTGCACTCAAATCGCCAATTCTACCGTGATTGTCACATATATGGCACTGTGGATTTCATATTTGGGGATGCAACAGTGGTGTTACAAAACTGTGACATCTTTGTGAGGAAACCAATGGGTCATCAATCTAACTTCATCACAGCACAAGGAAGAGATGATCCTAACAAACCAACTGGGATTTCAATCATTAATAGCAGGGTTAGGCCTGCATCTGAATTTGTCATGTCAAAGGATTCTTCCAAGACCTTCTTAGGCAGGCCTTGGAAAAGGTACTCAAGGACTGTGTTTCTGAAAACTGATTTAGATGGGTTGATACACCCAAGAGGGTGGAGTGAATGGGCTGGAAATTTTGCACTCTCAACTTTGTACTATGGAGAGTATATGAACTCAGGAAATGGTGCATCTACCCAGAATAGAGTGAACTGGCCGGGTTTCCATGTGCTGAGGAGTGCTAGTGAGGCCTCACCCTTTACAGTGAATCAGTTTCTGCAAGGGGAAAGATGGATTCCAGCTTCGGGGGTGCCTTTCTGGTCTGGAATTTAA 1455 0.4557 MASTCATAFLLLLLAMATTTTFCLQEMELLHMAQAQVSQAKNWVGNSVRLHGLGSLQSLNSDQSGVHNQTSTTVVALRDCAELYEESESRLSHMVSDNSNYTKEDALTWDKGYVEAHDQVLGRNLTMLLGQALVLYSKHKGKGKGPPQRTVSKANAGLLESWSPASYKADFTVAQDGSGSHRTIKEAVDALVSMGHNRPGRAVIHVKSGVYHEKVEIGSKLHNVMFVGDGIDRTIITGNRNVVQGSSTLGSATFDVSGDGFWARDMTFENTAGPEKHQAVALKVSSDLSVFYRCSFKGYQDTLYVHSNRQFYRDCHIYGTVDFIFGDATVVLQNCDIFVRKPMGHQSNFITAQGRDDPNKPTGISIINSRVRPASEFVMSKDSSKTFLGRPWKRYSRTVFLKTDLDGLIHPRGWSEWAGNFALSTLYYGEYMNSGNGASTQNRVNWPGFHVLRSASEASPFTVNQFLQGERWIPASGVPFWSGI 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi173g00015 484 SUPERFAMILY Pectin lyase-like 167 483 IPR011050 -
Sebi173g00015 484 Gene3D - 164 484 IPR012334 -
Sebi173g00015 484 PANTHER PECTINESTERASE 55 474 - -
Sebi173g00015 484 Pfam Pectinesterase 170 470 IPR000070 GO:0030599|GO:0042545
Sebi173g00015 484 ProSitePatterns Pectinesterase signature 2. 317 326 IPR033131 -
Sebi173g00015 484 FunFam Pectinesterase 164 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi173g00015 Sebi-Chr173 324432 327110 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi173g00015 10 484 Carbohydrate Esterase AT3G60730 52.794 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi173g00015 K01051 - gmx:100792852 748.814