Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi173g00014 ATGTCCAAATTTCACCTTGAACTGAGACTGTTGTGGTGTGACATCTATGGCACAGTTGACTTCATCTTTGGTAATGCTGCTGTGGTGTTCCAAAATTGTAACCTCTTTGCAAGAAACCCTCCAAACAAAGTTAACACAATCACTGCTCAAGGCAGAATCGATCCAAATCAGAACACTGGCATTTCCATTCACAGTTGCAGAGTGACAGCTGCCTCAGATTTGAAACCAGTTCAAGGCTCAGTAAAAACTTACCTTGGAAGACCTTGGCAACAGTACTCAAGGACAGTATTCATGAAGACATATCTTGATAGTTTGATCAATCCAGCAGGTTGGATGGAATGGAGTGCTAACTTTGCCTTAAGCACTCTGTACTATGGAGAGTACATGAACACAGGACCAGGTTCTTCAACCGCAAACAGAGTTAACTGGTCAGGATATCATGTCATTACCAGCGCTTTTGAAGCCTCAAAATTCATCGTTGCTAATTTATTACTGGAAACTCGTGGCTACCATCCACCCGTGTGCCCTTCACCTCTACTTTATAAGTTCTATCATTTGTTTGTGGATTTATTGATTCCTAATTCTTTTATTTTGCTTCCCACCAATATAAGTTTGAATGATGTATTATAA 630 0.4032 MSKFHLELRLLWCDIYGTVDFIFGNAAVVFQNCNLFARNPPNKVNTITAQGRIDPNQNTGISIHSCRVTAASDLKPVQGSVKTYLGRPWQQYSRTVFMKTYLDSLINPAGWMEWSANFALSTLYYGEYMNTGPGSSTANRVNWSGYHVITSAFEASKFIVANLLLETRGYHPPVCPSPLLYKFYHLFVDLLIPNSFILLPTNISLNDVL 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi173g00014 209 Gene3D - 11 172 IPR012334 -
Sebi173g00014 209 SUPERFAMILY Pectin lyase-like 11 164 IPR011050 -
Sebi173g00014 209 ProSitePatterns Pectinesterase signature 2. 15 24 IPR033131 -
Sebi173g00014 209 PANTHER PECTINESTERASE 13 164 - -
Sebi173g00014 209 Pfam Pectinesterase 13 164 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi173g00014 Sebi-Chr173 315476 316183 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi173g00014 13 164 Carbohydrate Esterase AT2G45220 73.026 9.01e-79 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi173g00014 K01051 - vvi:100255703 283.108