Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi173g00012 ATGGCTAGGAGGAAACTTACATATATCGCTAATGACTTGATGAGAAAAGAAACATACGAGAAAAGGAAGAAGGGTATCTTAAAGAAGGTGAGTGAACTCACCATTCTTTGTGGGATTCCAGCTTGTGTTATAATTTGCAGTCCTGATTCTCAAATAGAGGTCTGGCCAAACCAAGAAGGAGCCGAGCAGGTGATTGAGAGGTATAAGAATACATCTTTGATAGATAAAAGCAAGAATTTAAACCAAGAGAGCTTCCTCATGCAGAAGATTGCCAAAGCCCAAGACAAACTGAAGAAGTTGCGTCGAGACAACCATGAGAAGGAACTGACTATGGCTATGTTCCAGTATATGCAAGATGAAAACCTGCCAAACATGTCCTTTGAAGATGCGAATGATCTCAATAAGTTGATTGAGAAGAATTTGAATGACATTGAAATTAAGATTTCTAAGCTTAATTGA 459 0.3834 MARRKLTYIANDLMRKETYEKRKKGILKKVSELTILCGIPACVIICSPDSQIEVWPNQEGAEQVIERYKNTSLIDKSKNLNQESFLMQKIAKAQDKLKKLRRDNHEKELTMAMFQYMQDENLPNMSFEDANDLNKLIEKNLNDIEIKISKLN 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi173g00012 152 Coils Coil 127 147 - -
Sebi173g00012 152 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 145 - -
Sebi173g00012 152 SMART madsneu2 1 57 IPR002100 GO:0003677|GO:0046983
Sebi173g00012 152 CDD MADS_SRF_like 3 79 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sebi173g00012 152 ProSiteProfiles MADS-box domain profile. 1 59 IPR002100 GO:0003677|GO:0046983
Sebi173g00012 152 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 8 52 IPR002100 GO:0003677|GO:0046983
Sebi173g00012 152 Gene3D - 12 94 IPR036879 GO:0003677|GO:0046983
Sebi173g00012 152 Coils Coil 83 110 - -
Sebi173g00012 152 PRINTS MADS domain signature 1 21 IPR002100 GO:0003677|GO:0046983
Sebi173g00012 152 PRINTS MADS domain signature 21 36 IPR002100 GO:0003677|GO:0046983
Sebi173g00012 152 PRINTS MADS domain signature 36 57 IPR002100 GO:0003677|GO:0046983
Sebi173g00012 152 SUPERFAMILY SRF-like 4 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi173g00012 Sebi-Chr173 259239 259697 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi173g00012 3 151 Type I MADS-box Gene Family AT1G65300 40.132 2.40e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi173g00012 SRF-TF 7.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi173g00012 - - gmx:100792290 189.504