Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi173g00010 ATGGCAAGGAGGAAACTTACATATATCTCTAATGACTTGGCAAGAAAAAAAACATACAAGAAAAGGAAGAAGGGTATCTTAAAGAAGGTGAGTGAACTCACCATTCTTTGTGGGATTCCAGCGTGTGCTATAATTTGCAGTCCTTTTGATTCTCAAATAGAGGTCTGGCCAAACCAAGAAGGAGCTGAGCAGGTGATTGAGAGGTATAAGAATACATCTTTGATAGATAAAGGCAAAAATGTAAACCAAGAGAGCTTCCTCATGCAGGAGATTGCCAAAGCCCAAGACAAACTGAAGAAGTTGCGCCGAGACAACCATGAGAAGGAACTGACTATGGCTATGTTCCAGCATATGCAAGATGAAAACCTGCCAAACATGTCCTTTGAAGATGCGAATGATCTCAATAAGTTGATTGAGAAGAATTTGAATGACATTGAAATTAAGATTGCTAAGCTTAATTGA 462 0.3896 MARRKLTYISNDLARKKTYKKRKKGILKKVSELTILCGIPACAIICSPFDSQIEVWPNQEGAEQVIERYKNTSLIDKGKNVNQESFLMQEIAKAQDKLKKLRRDNHEKELTMAMFQHMQDENLPNMSFEDANDLNKLIEKNLNDIEIKIAKLN 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi173g00010 153 Gene3D - 12 96 IPR036879 GO:0003677|GO:0046983
Sebi173g00010 153 PANTHER MADS BOX PROTEIN 4 148 - -
Sebi173g00010 153 Coils Coil 84 111 - -
Sebi173g00010 153 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Sebi173g00010 153 FunFam Agamous-like MADS-box protein AGL80 11 95 - -
Sebi173g00010 153 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 8 48 IPR002100 GO:0003677|GO:0046983
Sebi173g00010 153 SMART madsneu2 1 58 IPR002100 GO:0003677|GO:0046983
Sebi173g00010 153 PRINTS MADS domain signature 1 21 IPR002100 GO:0003677|GO:0046983
Sebi173g00010 153 PRINTS MADS domain signature 21 36 IPR002100 GO:0003677|GO:0046983
Sebi173g00010 153 SUPERFAMILY SRF-like 3 79 IPR036879 GO:0003677|GO:0046983
Sebi173g00010 153 Coils Coil 128 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi173g00010 Sebi-Chr173 246020 246481 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi173g00010 3 152 Type I MADS-box Gene Family AT1G65300 42.105 7.99e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi173g00010 SRF-TF 1.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi173g00010 - - gmx:100792290 190.274