Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi173g00008 ATGGCTAGGAGGAGGGTGAAACTTGCATATATCTCTAATGACTCGAAAAGAAAAGCAACATATAGGAAAAGGAAGAAGGGTATCATAAAAAAGGTGAGTGAACTCACCGTTCTTTGTGGGATTCCAGCGTGTGCTATAATTTGCAGTCCTTTTGATTCTCAAATAGAGGCCTGGCCAAACCGTGAAGGGGTCGAGCGGGTGATTGAGAGGTATGAGAATACATTTGTGATAGATCAAAGCAAGAATGTAAACCAAGAGAGCTTCCTCAGGGAGAGGATTTCCAAAGCTGAAGACCAACTGAAGAAGCTGCGTCGGGACAACCATGAGAAAGAACTGACCATGGCTATGTTCCAACATATGCAAGATGGAAACCTTCAAAACATATCCTTTGAAGATGCGAATGATCTTAATAAGCTGATTGAGAAGAATTTGAATGACATTGAAATTAAGATGGCAAAGCTTAGTGTTTAG 471 0.4098 MARRRVKLAYISNDSKRKATYRKRKKGIIKKVSELTVLCGIPACAIICSPFDSQIEAWPNREGVERVIERYENTFVIDQSKNVNQESFLRERISKAEDQLKKLRRDNHEKELTMAMFQHMQDGNLQNISFEDANDLNKLIEKNLNDIEIKMAKLSV 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi173g00008 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sebi173g00008 156 Gene3D - 13 150 IPR036879 GO:0003677|GO:0046983
Sebi173g00008 156 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Sebi173g00008 156 Coils Coil 86 113 - -
Sebi173g00008 156 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Sebi173g00008 156 Coils Coil 130 156 - -
Sebi173g00008 156 FunFam Agamous-like MADS-box protein AGL80 13 97 - -
Sebi173g00008 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sebi173g00008 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi173g00008 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Sebi173g00008 156 PANTHER MADS BOX PROTEIN 3 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi173g00008 Sebi-Chr173 208307 208777 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi173g00008 1 147 Type I MADS-box Gene Family AT5G48670 50.667 4.11e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi173g00008 SRF-TF 5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi173g00008 - - gmx:100792290 194.126