Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi173g00002 ATGGCTAGGAGGAGGGTGATGAAACTTGCATATATCTCTAATGACTCGAAAAGAAAAGCAACATATAGGAAAAGGAAGAAGGGTATCATAAAAAAGGCCTGGCCAAACCGTGAAGGGGTCGAGCGGGTGATTGAGAGGTATGAGAATACATTTGTGATAGATCAAAGCAAGAATGTAAACCAAGAGCTTCCTCAGGGAGAGGATTTCCAAAGTGAAGACCAACTGAAGAAGCTGCGTCGGGACAACCATGAGAAAGAACTGACCATGGCTATGTTCCAACATATGCAAGATGGAAACCTTCAAAACATGTCCTTTGAAGATGCGATTGATCTTAATAAACTGATTGAGAAGAATTTGAATGACATTGAAATTAAGATGACAAAGCTTAGTGTTTAG 396 0.4015 MARRRVMKLAYISNDSKRKATYRKRKKGIIKKAWPNREGVERVIERYENTFVIDQSKNVNQELPQGEDFQSEDQLKKLRRDNHEKELTMAMFQHMQDGNLQNMSFEDAIDLNKLIEKNLNDIEIKMTKLSV 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi173g00002 131 ProSiteProfiles MADS-box domain profile. 2 33 IPR002100 GO:0003677|GO:0046983
Sebi173g00002 131 SUPERFAMILY SRF-like 4 63 IPR036879 GO:0003677|GO:0046983
Sebi173g00002 131 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 34 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi173g00002 Sebi-Chr173 40244 40715 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi173g00002 4 122 Type I MADS-box Gene Family AT1G65300 34.014 3.49e-15 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi173g00002 SRF-TF 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi173g00002 - - gmx:100792290 110.923