Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi172g00150 ATGGAGAGCAAACAGCACTCTAAAGGCCATATAACTCAAGAATTCTTCAAAGTTTTCATGCAAGAGACATCTCCCCACTTGAGTATACCAAAGTCTTTCAACAAGTTCTTCAATGGAACCACACCATGCAAGGTCACTCTTATGGATCAAGACAGAAATCCTTGGGATATTTGCTTGGAGAAAATCGAGGATCGCTTGGTTTTTAAAAACGGGTGGTGGCAATTTGCCAGGGATAAATGTTTAGAAGAAAGGGACTTTTTGGTTTTTGAGTATGATGGCAAGTCGACGTTTTATGTGAAGATCTTTTCCAAAAGTGGATGCAGGAAAGAAGCTGAAAATCGTGGAAAAGTTGTTCCCATTGTGATTTTGGAAGAAGATTCTGCTCAGAATCGTAGAAAAATCCAGCGGGGTTATAAAAGGAAACATCCACCAACACCCTCCAAAATAAATGACAACAAATCAGATTTAGAGGGTCCATCTCGGATAAAACCAAAAAGAACTTATGAAGAAAATGGTAACCGCGTTGAGAAGAAGGCACTTAGTCCATCACGGAGAAAACCAAAAAGAACTAATGAAGAAAATGGTAATCACGTTGAGAAGAAGGCACTTGGTCCGGCAAAGTGTGTTCCCCCAAAGAACACTCATTTTGAGGAAGTTCCTAGAAGAGTACTGAAGCAATTGAACATCAACCTGATATCAAAGATGAGTCTGAGAGATGAGAATAACAAACTGTGGCCGGTGGCTATCAGTAAAAAGCAAGAGGGCCGTCATTTTTTTGCCGACGGGTGGTATGATTTCCGGCAAGCTCACAATATTAAAGAAGGTCACCGTTGTGATTTTCAGTTTGTTATTGGCAAAGGAAATGTGGTCAAAGAATTGCTTGTGCGAGTGCTTCCACCTTCAAAATCAAAATGCCTATAG 921 0.4039 MESKQHSKGHITQEFFKVFMQETSPHLSIPKSFNKFFNGTTPCKVTLMDQDRNPWDICLEKIEDRLVFKNGWWQFARDKCLEERDFLVFEYDGKSTFYVKIFSKSGCRKEAENRGKVVPIVILEEDSAQNRRKIQRGYKRKHPPTPSKINDNKSDLEGPSRIKPKRTYEENGNRVEKKALSPSRRKPKRTNEENGNHVEKKALGPAKCVPPKNTHFEEVPRRVLKQLNINLISKMSLRDENNKLWPVAISKKQEGRHFFADGWYDFRQAHNIKEGHRCDFQFVIGKGNVVKELLVRVLPPSKSKCL 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi172g00150 306 CDD B3_DNA 15 103 IPR003340 GO:0003677
Sebi172g00150 306 SMART B3_2 208 301 IPR003340 GO:0003677
Sebi172g00150 306 SMART B3_2 15 105 IPR003340 GO:0003677
Sebi172g00150 306 SUPERFAMILY DNA-binding pseudobarrel domain 15 107 IPR015300 -
Sebi172g00150 306 CDD B3_DNA 219 288 IPR003340 GO:0003677
Sebi172g00150 306 PANTHER B3 DOMAIN-CONTAINING 10 286 - -
Sebi172g00150 306 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
Sebi172g00150 306 MobiDBLite consensus disorder prediction 132 213 - -
Sebi172g00150 306 ProSiteProfiles B3 DNA-binding domain profile. 219 301 IPR003340 GO:0003677
Sebi172g00150 306 Gene3D - 8 107 IPR015300 -
Sebi172g00150 306 Gene3D - 206 298 IPR015300 -
Sebi172g00150 306 MobiDBLite consensus disorder prediction 144 200 - -
Sebi172g00150 306 Pfam B3 DNA binding domain 219 285 IPR003340 GO:0003677
Sebi172g00150 306 Pfam B3 DNA binding domain 15 104 IPR003340 GO:0003677
Sebi172g00150 306 SUPERFAMILY DNA-binding pseudobarrel domain 216 287 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi172g00150 Sebi-Chr172 1559683 1561622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi172g00150 14 304 B3 DNA Binding Superfamily AT5G66980 28.994 1.68e-24 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi172g00150 B3 2.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi172g00150 - - ccaj:109795839 282.722