Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi172g00139 ATGGAGCTACCTTCGAATCTGTTGGCAGACGAGGCGAGCCCTGAGTGGATGAACAAAGGGGACAACGCATGGCAGCTAACGGCAGCCACATTGGTGGGCCTCCAAAGCATTCCTGGGCTTGTCATCCTCTATGGAAGCCTTGTTAAAAAGACATGGGCCATTAACTCTGCTTTCATGGCCTTCTATGCCTTCGCTGCCGTTCTCCTTTGCTGGGTTTCGTGGGCTTTCCGCATGTCATTCGGCGATAAATTGGTTTTCTTCTTAGGGAAACCCGGCGTCGCATTGGATGAGAAATTCCTTTTAGGGCAGGCCTTTTTGGGGCTCTTTCCTACCGCTACCATGGTCTTTTTTCAAGGTGTGTTTGCAGGGATCACTTTGATTTTAATAGCAGGTGCGTTATTGGGGAGAATGAATATTCGAGCGTGGATGCTGTTTGTGCCACTTTGGGTTACTTTCTCATACAGTGTCACTGCCTTCAGCATTTGGTGCCCTGATGGATGGTTGGCAAAGCTTGGAGTTATTGATTTTGCTGGGGGTTATGTTATTCACCTCTCTGCAGGAGTTGCTGGTGTCACTGCAGCTTATTGGGTAGGTCCACGATCAGAGAAAGAGAGAGAAAATTTTGCATCAAACAACATGATGGTGGTGCTTGCAGGCGCAGGCCTGCTTTGGATGGGTTGGAGTGGATTCAACGGTGCAGCTCCATTCGTAGCCAGCACAGTGGCATCTCTTGCTGTCCTGAACACACACGTGTGTACTTCCGCAAGCGTTGTCGTTTGGGTCCTACTCGATACTTTCTGCTTCGGCAAACCTACAGTGTTTGGTGCCGTACAAGGCATGATCACTGGTCTCGTTTGCATCACACCTGCCGCAGGAGTTGTGCAGGGGTGGGCAGCGATTTTGATGGGTTTGATATCAGGAAGTGTTCCATGGTACACAATGATGGTGCTCCACAACAAGGTTCCTTTCTTAAAGCAAATAGATGACCCCATGGCGGTGTTTCACACGCACGCCATCGCGGGTGCTCTTGGCGGCATTCTCACTGGCTTCTTTGCTGTGCCTAAACTGTGCCGTCTCTTCTACATGGTTCCCGATTGGGAAAAATACATTGGCCTCTTCTATGGCCTCCAGAATGGTGCCACTCATGCGGGTTTAAGACAGATGGCAATCCAAGTTGGAGCCATTGCTTTTGTCATTTGCTTCAATTTCGTTACGACGAGCTTGATTTGCTTGCTTGTGGGTCTCATAGTACCACTTAGGCTTAATACCGATGCATTGCATATGGGTGACAAGGCAATACATGGAGAGGAGGCTTTCGCCTTGCATGGTGAGGCTACAAAATTTGAGAACCTGAAGCACAATAAGATTTATGATACTCAAGATTTTTCATTCGTTAAGGAGTCAAGGTCATTAGGTCAGCTTCAAATGGTATGA 1434 0.484 MELPSNLLADEASPEWMNKGDNAWQLTAATLVGLQSIPGLVILYGSLVKKTWAINSAFMAFYAFAAVLLCWVSWAFRMSFGDKLVFFLGKPGVALDEKFLLGQAFLGLFPTATMVFFQGVFAGITLILIAGALLGRMNIRAWMLFVPLWVTFSYSVTAFSIWCPDGWLAKLGVIDFAGGYVIHLSAGVAGVTAAYWVGPRSEKERENFASNNMMVVLAGAGLLWMGWSGFNGAAPFVASTVASLAVLNTHVCTSASVVVWVLLDTFCFGKPTVFGAVQGMITGLVCITPAAGVVQGWAAILMGLISGSVPWYTMMVLHNKVPFLKQIDDPMAVFHTHAIAGALGGILTGFFAVPKLCRLFYMVPDWEKYIGLFYGLQNGATHAGLRQMAIQVGAIAFVICFNFVTTSLICLLVGLIVPLRLNTDALHMGDKAIHGEEAFALHGEATKFENLKHNKIYDTQDFSFVKESRSLGQLQMV 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi172g00139 477 Pfam Ammonium Transporter Family 23 438 IPR024041 GO:0008519|GO:0016020|GO:0072488
Sebi172g00139 477 ProSitePatterns Ammonium transporters signature. 175 200 IPR018047 GO:0008519|GO:0016020|GO:0072488
Sebi172g00139 477 PRINTS Rhesus blood group protein signature 118 134 IPR002229 GO:0005886
Sebi172g00139 477 PRINTS Rhesus blood group protein signature 245 267 IPR002229 GO:0005886
Sebi172g00139 477 PRINTS Rhesus blood group protein signature 214 232 IPR002229 GO:0005886
Sebi172g00139 477 PRINTS Rhesus blood group protein signature 300 318 IPR002229 GO:0005886
Sebi172g00139 477 FunFam Ammonium transporter 5 442 - -
Sebi172g00139 477 Gene3D Ammonium transporter AmtB like domains 5 457 IPR029020 -
Sebi172g00139 477 PANTHER AMMONIUM TRANSPORTER MEP2 5 450 IPR001905 GO:0008519|GO:0016020|GO:0072488
Sebi172g00139 477 SUPERFAMILY Ammonium transporter 16 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi172g00139 Sebi-Chr172 1483696 1486068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi172g00139 112 471 Inorganic Solute Cotransporters AT2G38290 51.099 1.41e-123 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi172g00139 K03320 - gmx:100782944 847.425