Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi172g00128 | ATGGCTCCCGACGCTTCCGATGCACTTGCAGTGAGGCAGAAAGTTCAACTATTTCTCAACGCTGCTCGTACTGGCAATCTCGATCTCTTAAAGAATTTGGCGGCGCAGTTGGATGAGGGCAAGGATTTAACTAAAACAGTAGAAGCAATCAAAGACGCTAACAAGCGAGGAGCATTGCATTTTGCAGCTCGTGAAGGCCAGAGTGAGGTTTGCAAATACCTCTTACAGGATTTAAAGCTCCATGTTGATTCTAAAGATGATGATGGTGAGACTGCTCTCATTCATGCTGCTCGTCAGGGACACACAGCCACTGCTAAATTTCTGATTGACCATGGTGCCGATCCTACTATAGCTAGTAATCTAGGGGCTACTGCCTTGCACCATTCTGCAGGGATAGGAGATAATGAGCTGCTCAAGTATTTGCTGTCCAGAGGAGTTAATCCTGATCTAGAAAGTGATGCAGGAACGCCTTTGGTTTGGGCTGCCGGTCATGCCCAACAAGCTGCTGTCAGTGTTCTATTAGAACATGGTGCAAATCCTAATGCTGAAACTGATGATGGTATTACCCCACTCCTTTCTTCTGTGGCAGCTGGTTCTTTGGCATGTTTAGAGCTGTTAATTCAGGCAGGTGCTAAAGTGAATATTAGCGCTGGTGGAGCAACACCTTTGCACATTGCAGCTGATAATGGGAGTCTAGAACTTATAAACTGCTTATTGAAAGCTGGAGCTGATCCTAATATCTCTGATGAGGATGGTGTTAAGCCCATACAAGTTGCAGCTGCAAGGGGTAATCGAGTAGCTGTTGAAATACTATTCCCCTTGACGTCCAAAATTGATACTGTTCCAACTTGGACTATTGATGGGATACTTGAGTACATGCAATCTGAAACTAAAAAGCAGCAGGATGAATTGGTATATGCTAAAGAAACTAATCAGCCCAAGGATGCTATTCGGGAGCAAAATATCCCTGAGGTGGAACCTGAAGCAAAAAGGAGGGTAGCAGAAGCTAAATCAAGAGGGGACGAGGCTTTTAAAAGGAAAGACTATCATATGGCTATAGATTCCTATACACAAGCAATTGATCTGAATCCCACTGATGCTACGTTGCTATCCAATAGGAGTCTTTGTTGGATTAGGCTGGGTCAAGCTGATCATGCTTTAGCTGATGCAAAGGCCTGCAGAGCATTAAGACCAGATTGGCCAAAAGCTTGTTATAGGGAAGGGGCAGCTTTGCGTGTGTTACAGAAGTTTGATGAAGCTGCAAATGCTTTCTATGAGGGAGTAACACTTGATCCTGAGAATAAGGAGCTTGTAAATGCATTCAGGGAAGCTGTTGAAGCTGGAAGGAAATTTCATGGCACAGCTGAGAATAAATCATAG | 1380 | 0.4428 | MAPDASDALAVRQKVQLFLNAARTGNLDLLKNLAAQLDEGKDLTKTVEAIKDANKRGALHFAAREGQSEVCKYLLQDLKLHVDSKDDDGETALIHAARQGHTATAKFLIDHGADPTIASNLGATALHHSAGIGDNELLKYLLSRGVNPDLESDAGTPLVWAAGHAQQAAVSVLLEHGANPNAETDDGITPLLSSVAAGSLACLELLIQAGAKVNISAGGATPLHIAADNGSLELINCLLKAGADPNISDEDGVKPIQVAAARGNRVAVEILFPLTSKIDTVPTWTIDGILEYMQSETKKQQDELVYAKETNQPKDAIREQNIPEVEPEAKRRVAEAKSRGDEAFKRKDYHMAIDSYTQAIDLNPTDATLLSNRSLCWIRLGQADHALADAKACRALRPDWPKACYREGAALRVLQKFDEAANAFYEGVTLDPENKELVNAFREAVEAGRKFHGTAENKS | 459 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi172g00128 | 459 | ProSiteProfiles | Ankyrin repeat profile. | 186 | 218 | IPR002110 | GO:0005515 | |
| Sebi172g00128 | 459 | Pfam | Ankyrin repeats (3 copies) | 20 | 117 | IPR002110 | GO:0005515 | |
| Sebi172g00128 | 459 | Pfam | Ankyrin repeats (3 copies) | 186 | 249 | IPR002110 | GO:0005515 | |
| Sebi172g00128 | 459 | Pfam | Ankyrin repeats (3 copies) | 122 | 182 | IPR002110 | GO:0005515 | |
| Sebi172g00128 | 459 | SUPERFAMILY | TPR-like | 333 | 444 | IPR011990 | GO:0005515 | |
| Sebi172g00128 | 459 | ProSiteProfiles | Ankyrin repeat profile. | 218 | 250 | IPR002110 | GO:0005515 | |
| Sebi172g00128 | 459 | PANTHER | ANKYRIN REPEAT FAMILY PROTEIN | 8 | 451 | - | - | |
| Sebi172g00128 | 459 | ProSiteProfiles | Ankyrin repeat region circular profile. | 218 | 250 | - | - | |
| Sebi172g00128 | 459 | SUPERFAMILY | Ankyrin repeat | 19 | 273 | IPR036770 | - | |
| Sebi172g00128 | 459 | Gene3D | Tetratricopeptide repeat domain | 331 | 446 | IPR011990 | GO:0005515 | |
| Sebi172g00128 | 459 | ProSiteProfiles | Ankyrin repeat profile. | 88 | 120 | IPR002110 | GO:0005515 | |
| Sebi172g00128 | 459 | SMART | ANK_2a | 121 | 150 | IPR002110 | GO:0005515 | |
| Sebi172g00128 | 459 | SMART | ANK_2a | 54 | 84 | IPR002110 | GO:0005515 | |
| Sebi172g00128 | 459 | SMART | ANK_2a | 153 | 182 | IPR002110 | GO:0005515 | |
| Sebi172g00128 | 459 | SMART | ANK_2a | 218 | 247 | IPR002110 | GO:0005515 | |
| Sebi172g00128 | 459 | SMART | ANK_2a | 251 | 280 | IPR002110 | GO:0005515 | |
| Sebi172g00128 | 459 | SMART | ANK_2a | 88 | 117 | IPR002110 | GO:0005515 | |
| Sebi172g00128 | 459 | SMART | ANK_2a | 186 | 215 | IPR002110 | GO:0005515 | |
| Sebi172g00128 | 459 | ProSiteProfiles | Ankyrin repeat profile. | 153 | 185 | IPR002110 | GO:0005515 | |
| Sebi172g00128 | 459 | ProSiteProfiles | TPR repeat profile. | 401 | 434 | IPR019734 | GO:0005515 | |
| Sebi172g00128 | 459 | SMART | tpr_5 | 333 | 366 | IPR019734 | GO:0005515 | |
| Sebi172g00128 | 459 | SMART | tpr_5 | 367 | 400 | IPR019734 | GO:0005515 | |
| Sebi172g00128 | 459 | SMART | tpr_5 | 401 | 434 | IPR019734 | GO:0005515 | |
| Sebi172g00128 | 459 | ProSiteProfiles | Ankyrin repeat region circular profile. | 186 | 215 | - | - | |
| Sebi172g00128 | 459 | Pfam | Tetratricopeptide repeat | 340 | 366 | IPR019734 | GO:0005515 | |
| Sebi172g00128 | 459 | ProSiteProfiles | TPR repeat profile. | 333 | 366 | IPR019734 | GO:0005515 | |
| Sebi172g00128 | 459 | ProSiteProfiles | Ankyrin repeat profile. | 121 | 153 | IPR002110 | GO:0005515 | |
| Sebi172g00128 | 459 | PRINTS | Ankyrin repeat signature | 122 | 137 | IPR002110 | GO:0005515 | |
| Sebi172g00128 | 459 | PRINTS | Ankyrin repeat signature | 169 | 183 | IPR002110 | GO:0005515 | |
| Sebi172g00128 | 459 | ProSiteProfiles | Ankyrin repeat region circular profile. | 88 | 114 | - | - | |
| Sebi172g00128 | 459 | ProSiteProfiles | Ankyrin repeat region circular profile. | 121 | 153 | - | - | |
| Sebi172g00128 | 459 | Gene3D | - | 5 | 153 | IPR036770 | - | |
| Sebi172g00128 | 459 | Gene3D | - | 154 | 318 | IPR036770 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi172g00128 | Sebi-Chr172 | 1380966 | 1386619 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi172g00128 | 125 | 330 | Ion Channels | AT4G32500 | 28.230 | 1.62e-13 | 71.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi172g00128 | - | - | gmx:100793914 | 818.15 |