Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi172g00118 ATGGGGACTCCAGTGAATATTACTGTGGGTTCTAATGTATGGGTTGAAGATCACGATATAGCTTGGGTTGATGGACAGGTATCAAAAATAAATGGACAGGATGTTGAAGTTGAAGCTACCAATGGAAAGAAGGTTGTGGCAAAGTTATCAAAAATATATCCCAAAGATACGGAAGCTCCTGCTGGTGGAGTGGATGATATGACAAAGTTGTCCTATTTGCATGAGCCTGGAGTCTTGCAGAACTTAAAAATTAGATATGAATTGAATGAAATATATACTTATACTGGAAATATTCTGATCGCAATAAATCCATTCCAAAAACTACCTCATATTTATGATGCACACATGATGCAACAATACAAGGGAGCACCATTTGGAGAGTTAAGCCCTCATGTATTTGCAGTTGCTGATGTTGCATATAGGGCAATGATTAATGAAACAAAAAGCAATTCAATTCTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGCAATACCTTGCTTTCTTAGGTGGTAGGGTTGCCACTGAAGGACGAACAGTTGAACAACAAGTTCTTGAATCAAACCCAGTTTTGGAAGCATTTGGTAATGCTAAAACTGTCAGGAATAACAATTCCAGTCGTTTTGGTAAATTTGTTGAGATCCAATTTGATAAGAGTGGAAGAATCTCAGGAGCAGCCATTCGAACATACCTTCTAGAGAGATCTCGGGTTTGCCAAATTAATGATCCTGAACGCAACTACCACTGCTTTTATCTTCTTTGTGCTGCACCACAGGAGGAAATTGAGAAATACAAATTAGGACATCCTAAAACATTTCATTACCTTAACCAGTCAAAATGCTTTGAACTGGCTGATATAAGTGATTCTCGTGAGTATCTTGCCACTAGGAGAGCTATGGATATTGTTGGAATAAGCCAAAAAGAGCAGGAAGCAATTTTCAGAGTTGTTGCTTCGATTCTTCATCTTGGTAATATTGAGTTTGCTAAAGGAAAGGAAGTTGATTCATCAGTTCCAAAAGATGATAAATCCAAATTCCACTTAAAAACAACTGCTGAGCTCCTTATGTATGGATGGCGGTGTGACGTTGGTGGCTTGGAAGATGCATTATGTAAGCGTGTCATGATCACCCCTGAGGAAGTTATAAAACGGAGCCTTGATCCCCAAAGTGCAACAGTCAGCAGAGATGGCTTAGCAAAAACAATTTATTCTAGGCTGTTTGACTGGTTGGTGGACAAGATTAATAATTCAATCGGACAAGACTCCAATTCTAAATCTTTGATTGGGGTCCTTGATATCTATGGTTTTGAAAGCTTTAAATCTAACAGAAACCTGGGGGAATCATTGCTCTCCTTGATGAAGCTTGGTAAAATATTGTTTTCTCCCCTGAATTTCTTCTTTAAAAGGGTGGAGGGTGTTTTAGAGGCAATCAGAATCAGTTGTGCTGGGTACCCTACTCGCCGTGCTTTCTTTGAGTTTATAAACCGTTTTTCCCTCCTTGCCCCAGAGGTCACAGAAGCAAACCATGATGAGAAGACTGTTTGCCAAAAGATTTTAGAAAATATGGGGCTTAAAGGATATCAGATTGGAAAAACAAAGGTATTCCTAAGAGCAGGTCAGATGGCTGAACTAGACGCAAGGAGAGCTCAAGTACTAAGTAATGCAGCAAAAACTATCCAACGGCGTATACGAACCCATCAAGCTCGTAAATATTATCTTGCATTACGAATGAAGACGATATACGTGCAGTCTCTGTGGAGAGGAAGACTTGCATGCAAACTTTATCATCACCTGAGAAGAGAGGCTGCTGCTGTGAAAATTCAGAAGAATGCACGCAGATATGAAGCTAGGAAAGCGTATACTAAACTCCAAGCATCAGTACTTACTTTGCAAACAGCTTTGAGGGCAATTGCTGCCCTTAAGGAGTACAGTTTCAGGAGACGGACTAAAGCTTCCGTCATAATTCAGGCTCGGTGGCGGTGCCACAAAGCTTCCTCATATTATAAGAGGCTGAGGAAAGGTGCAATAGTGACCCAATGCCGATGGAGGGGGCGTTTGGGCAGGAAAGAACTTAGGAAACTGAAAATGGCTGCAAGAGAAACTGGCGCACTTAAAGAAGCAAAGGACAAGCTTGAAAAACGAGTGGAGGAACTCACTTGGCGTCTCCAACTAGAAAAGAGTTTAAGGACCAACCTAGAAGAATCAAAAGCACAAGAGATAGCAAAACTGCAGAATTCACTGCAGGAGATGCAGGGAAAAGTTGATGAAGCCAATGCTGTGCTTGTAAAGGAGCGAGAGAATGCAAAGAAAGCTGTTGAAGAAACACCTCCTGTTATTAAAGAAACTCAGGTTATTGTTGAAGACACACAGAAGGTTGAATCACTAACAGCGGAAGTTGAGAACCTAAAGGTGTATAATTTATCTCATCTATATGATGTTGCCTTGGCTTTACATTCCCCACAGACTTCACTAGAGTCTGAGAAAGAGAAAGCTGATGATTTTGAAAGGAAATATAATGAAGCCCAAGCTTCAAGTGAAGAAAGGGGTAAAAAATTAGAAGATACAGAGAAGAAGGTCCGTCAGCTCCAAGAATCGTTGACCAGGCTAGAAGAGAAGATTACTAATTTAGAATCAGAGAATCAGGTTCTACGTCAACAAGCTGTGTCCATGGCACCTAATAAGTTCCTCTCAGGACGCTCCAGATCAATTATTCAGAGAGCTGACAGTGGACATATTGCAGTGGAAGCAAAAACACATGTGGATATGCATAGCCCATCAATGAACCACAGGGAATCGTCTGAAGTGGAGGATAAACCACAGAGGTCATTGAATGAGAAACAACAGGAGAACCAAGAGTTGCTCATTAGATGTATTGCACAACATCTAGGCTTTGCTGGCAATAGACCAATTGCTGCCTGTATCATATACAAATGCCTCTTGCATTGGAGATCATTTGAAGTTGAGCGTACTAGCGTTTTTGATCGTATAATCCAAACTATTGGCCATGCAATTGAGACCCAGGATAACAATGATGTCTTGGCTTATTGGTTATCCAATGCTTCTACACTTCTCTTGTTGCTCCAGCGAACACTTAAGGCAAGTGGTGCTGCTGGAATGGCTCCTCAACGCCGTCGCTCTTCCTCAGCAACCCTATTTGGGAGAATGACACAAAGTTTCCGTGGAGCTCCAGCAGGAGTCAATCTTTCCCTAATAAATGGTAGCATGAGTGGTGGAGTAGATACATTAAGACAAGTTGAAGCCAAGTACCCAGCACTGCTTTTCAAACAGCAGCTTACAGCTTATGTTGAAAAGATATATGGAATGATTCGAGATAACTTGAAGAAAGAAATATCTCCCTTGCTTGGATTATGCATCCAGGCACCAAGAACATCCAGAGCAAGCTTGGTTAAAGGATCATCACGTTCAGTTGCAACCACTGAAGCCCAGAAAGCTCTGATTGCTCACTGGCAGGGGATAGTTAAGAGCCTTGGGAACTTCTTAAATACTTTGAAAGCAAATCATGTTCCCCCATTTTTGGTTCGTAAGCTCTTTCAATAA 3576 0.4116 MGTPVNITVGSNVWVEDHDIAWVDGQVSKINGQDVEVEATNGKKVVAKLSKIYPKDTEAPAGGVDDMTKLSYLHEPGVLQNLKIRYELNEIYTYTGNILIAINPFQKLPHIYDAHMMQQYKGAPFGELSPHVFAVADVAYRAMINETKSNSILVSGESGAGKTETTKMLMQYLAFLGGRVATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQINDPERNYHCFYLLCAAPQEEIEKYKLGHPKTFHYLNQSKCFELADISDSREYLATRRAMDIVGISQKEQEAIFRVVASILHLGNIEFAKGKEVDSSVPKDDKSKFHLKTTAELLMYGWRCDVGGLEDALCKRVMITPEEVIKRSLDPQSATVSRDGLAKTIYSRLFDWLVDKINNSIGQDSNSKSLIGVLDIYGFESFKSNRNLGESLLSLMKLGKILFSPLNFFFKRVEGVLEAIRISCAGYPTRRAFFEFINRFSLLAPEVTEANHDEKTVCQKILENMGLKGYQIGKTKVFLRAGQMAELDARRAQVLSNAAKTIQRRIRTHQARKYYLALRMKTIYVQSLWRGRLACKLYHHLRREAAAVKIQKNARRYEARKAYTKLQASVLTLQTALRAIAALKEYSFRRRTKASVIIQARWRCHKASSYYKRLRKGAIVTQCRWRGRLGRKELRKLKMAARETGALKEAKDKLEKRVEELTWRLQLEKSLRTNLEESKAQEIAKLQNSLQEMQGKVDEANAVLVKERENAKKAVEETPPVIKETQVIVEDTQKVESLTAEVENLKVYNLSHLYDVALALHSPQTSLESEKEKADDFERKYNEAQASSEERGKKLEDTEKKVRQLQESLTRLEEKITNLESENQVLRQQAVSMAPNKFLSGRSRSIIQRADSGHIAVEAKTHVDMHSPSMNHRESSEVEDKPQRSLNEKQQENQELLIRCIAQHLGFAGNRPIAACIIYKCLLHWRSFEVERTSVFDRIIQTIGHAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGAPAGVNLSLINGSMSGGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVATTEAQKALIAHWQGIVKSLGNFLNTLKANHVPPFLVRKLFQ 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi172g00118 1191 Coils Coil 739 780 - -
Sebi172g00118 1191 ProSiteProfiles Myosin motor domain profile. 478 555 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sebi172g00118 1191 PRINTS Myosin heavy chain signature 433 461 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sebi172g00118 1191 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sebi172g00118 1191 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sebi172g00118 1191 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sebi172g00118 1191 ProSiteProfiles IQ motif profile. 677 706 IPR000048 GO:0005515
Sebi172g00118 1191 Gene3D - 490 556 - -
Sebi172g00118 1191 Coils Coil 700 734 - -
Sebi172g00118 1191 FunFam unconventional myosin-Va 656 704 - -
Sebi172g00118 1191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 608 IPR027417 -
Sebi172g00118 1191 ProSiteProfiles IQ motif profile. 606 635 IPR000048 GO:0005515
Sebi172g00118 1191 SMART MYSc_2a 56 556 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sebi172g00118 1191 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Sebi172g00118 1191 ProSiteProfiles IQ motif profile. 654 680 IPR000048 GO:0005515
Sebi172g00118 1191 MobiDBLite consensus disorder prediction 827 863 - -
Sebi172g00118 1191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 608 706 IPR027417 -
Sebi172g00118 1191 SMART iq_5 676 698 IPR000048 GO:0005515
Sebi172g00118 1191 SMART iq_5 557 579 IPR000048 GO:0005515
Sebi172g00118 1191 SMART iq_5 653 675 IPR000048 GO:0005515
Sebi172g00118 1191 SMART iq_5 580 602 IPR000048 GO:0005515
Sebi172g00118 1191 SMART iq_5 605 627 IPR000048 GO:0005515
Sebi172g00118 1191 Pfam Myosin head (motor domain) 64 448 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sebi172g00118 1191 Pfam Myosin head (motor domain) 475 543 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sebi172g00118 1191 FunFam unconventional myosin-Va 560 608 - -
Sebi172g00118 1191 FunFam Myosin 2 312 432 - -
Sebi172g00118 1191 FunFam Myosin heavy chain 252 307 - -
Sebi172g00118 1191 ProSiteProfiles Myosin motor domain profile. 62 455 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sebi172g00118 1191 PANTHER MYOSIN 54 448 - -
Sebi172g00118 1191 Pfam Myosin N-terminal SH3-like domain 9 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Sebi172g00118 1191 Gene3D Myosin VI head, motor domain, U50 subdomain 312 450 - -
Sebi172g00118 1191 MobiDBLite consensus disorder prediction 929 952 - -
Sebi172g00118 1191 ProSiteProfiles Dilute domain profile. 1000 1191 IPR002710 -
Sebi172g00118 1191 SUPERFAMILY Tropomyosin 709 894 - -
Sebi172g00118 1191 Gene3D Kinesin motor domain 12 296 IPR036961 -
Sebi172g00118 1191 ProSiteProfiles IQ motif profile. 581 610 IPR000048 GO:0005515
Sebi172g00118 1191 ProSiteProfiles IQ motif profile. 558 585 IPR000048 GO:0005515
Sebi172g00118 1191 MobiDBLite consensus disorder prediction 929 951 - -
Sebi172g00118 1191 Gene3D - 656 705 - -
Sebi172g00118 1191 Gene3D - 608 655 - -
Sebi172g00118 1191 Gene3D - 557 607 - -
Sebi172g00118 1191 Pfam IQ calmodulin-binding motif 608 626 IPR000048 GO:0005515
Sebi172g00118 1191 Pfam IQ calmodulin-binding motif 655 675 IPR000048 GO:0005515
Sebi172g00118 1191 Pfam IQ calmodulin-binding motif 560 578 IPR000048 GO:0005515
Sebi172g00118 1191 Pfam IQ calmodulin-binding motif 678 698 IPR000048 GO:0005515
Sebi172g00118 1191 MobiDBLite consensus disorder prediction 829 863 - -
Sebi172g00118 1191 Coils Coil 830 892 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi172g00118 Sebi-Chr172 1262589 1273484 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi172g00118 1 448 Myosins gene family AT1G54560 88.839 0.0 860
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi172g00118 K10357 - gmx:100816792 1154.43