Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi172g00111 ATGCTTCCTGATCCGGGGTGTGCACGTTGGCTGAGTTTCCTTGGACTGGGGTGTGTTATTCGGGGTTCCAGATCCCGGCCTGACCAAGGACAAGCTCGGCCAGGTCCGGAACAGATTCTTAAATGCCAAAGAACAAAACTCAGAAATCTTACTTTTCTACAGATAGTGCAATTGTGTGAGATGCATTTCTTTTACTCTAGAAATAGGAAAGAAGGAGTTGAAGGTAAGAGAAAAGCTTCTTTCGATCGTCATAGTGGAGAAAGACCATCACAGAAAATAAACTTGGTGGATGAAGATGACCAGGAAATCATTGAGTCCTCTCAAACTTCCATGGAAGATGTTAAGCCTACGACCAGTTCACAAGCACCACATACAACATTGAGGGGGGCAGAGAAGATTTCCAATAAAGCATCATCTGCAGAGCATCATGGTCATTTTGAAAAAGAGCTTGTGAAATCAAGAAAAAAGAAACCTAAGTTACAATCTCGACCTATTTCAACAAATTATAATGGTAATGGTTCATCTGAGGCTGCAAATGGAAATCATTGTGTCAACCCTCTGTCAACTCATAATCTGGATATGCAAAGCGATTGTCTTTCCTCATCATTTCCTTGTGCATGTGCTCAAGAAACTGGTGGAGAGTTTGCTTACACACCACAAGGTTTATTGAAAGAAGAATTTCTAACAGCTTGCTTGTCTATGAAGGATGAACCTCAAGATCATCATTATGTGTACTGTCAAGAGTGTCCATTGGAGAAGGCTAAGAATGAGTACATGCCTGAAAAATGCAAGGGGCATTTAGTTAGGAAGTTTATAAAGGAATGTTGGACCAAATGTGGATGTGACATGTCCTGCGGAAATCGAATAGTGCAAAGAGGTTTAAGATGCAAATTGCAGGTGTTCTTAACTCGTGAAGGTAAGGGATGGGGACTTAGAACACTAGAAAACTTGCCGAAGGGAACTTTTGTATGTGAATATGTTGGGGAAATATTAACCAACACAGAGTTATACGAAAGGAATGTGCAGAATCGTGGCAGTGACAGACATACATATCCTGTAACTCTTGATGCAGACTGGGGCTCAGAAGGGGCATTAAAGGATGAGGAGGCACTATGTTTAGATGCAACATATAATGGAAATGTTGCCAGATGCTATGATGCAAATCTCATAGATATTCCTGTTGAAGTGGAGACCCCTGATCACCACTATTATCATGTTGCCTTCTTTACCAACAGGAAAGTGAATGCATATGAGGAGTTAACGTGGGATTATGGTATTGATTTTGATGATCATGACCATCCTATTGAAGCATTTCGATGTTGTTGTGGAAGCGCGTTCTGCGGTGATAAGAAACAAAAAGGTTAG 1365 0.411 MLPDPGCARWLSFLGLGCVIRGSRSRPDQGQARPGPEQILKCQRTKLRNLTFLQIVQLCEMHFFYSRNRKEGVEGKRKASFDRHSGERPSQKINLVDEDDQEIIESSQTSMEDVKPTTSSQAPHTTLRGAEKISNKASSAEHHGHFEKELVKSRKKKPKLQSRPISTNYNGNGSSEAANGNHCVNPLSTHNLDMQSDCLSSSFPCACAQETGGEFAYTPQGLLKEEFLTACLSMKDEPQDHHYVYCQECPLEKAKNEYMPEKCKGHLVRKFIKECWTKCGCDMSCGNRIVQRGLRCKLQVFLTREGKGWGLRTLENLPKGTFVCEYVGEILTNTELYERNVQNRGSDRHTYPVTLDADWGSEGALKDEEALCLDATYNGNVARCYDANLIDIPVEVETPDHHYYHVAFFTNRKVNAYEELTWDYGIDFDDHDHPIEAFRCCCGSAFCGDKKQKG 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi172g00111 454 ProSiteProfiles Pre-SET domain profile. 179 293 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi172g00111 454 Pfam SET domain 308 425 IPR001214 GO:0005515
Sebi172g00111 454 CDD SET_SETDB-like 197 425 - -
Sebi172g00111 454 ProSiteProfiles SET domain profile. 296 425 IPR001214 GO:0005515
Sebi172g00111 454 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 119 453 - -
Sebi172g00111 454 SUPERFAMILY SET domain 193 447 IPR046341 -
Sebi172g00111 454 Gene3D SET domain 152 450 IPR046341 -
Sebi172g00111 454 MobiDBLite consensus disorder prediction 107 133 - -
Sebi172g00111 454 SMART set_7 296 431 IPR001214 GO:0005515
Sebi172g00111 454 Pfam Pre-SET motif 169 288 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi172g00111 454 MobiDBLite consensus disorder prediction 74 175 - -
Sebi172g00111 454 MobiDBLite consensus disorder prediction 135 154 - -
Sebi172g00111 454 MobiDBLite consensus disorder prediction 74 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi172g00111 Sebi-Chr172 1202114 1207471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi172g00111 272 425 C2H2 Transcription Factor Family AT2G23740 40.252 2.05e-27 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sebi172g00111 SET 2.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi172g00111 - - gmx:100802372 496.508