Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi172g00109 ATGTCTTCATCATTACCTGTTCTTCCCACCCCCCTGGAAAACAAGTATATGAAACCCCCGGATTCTTTTCAGCTTTCGCCGATCAGAGATCTGACTGCAAATCCTGCCTCACTGCAAGCTACATCATCAAATTCAATCAGAAGTGTTGGGCAGGTGTTTTCATCCCCAGCTGAATATCCTGGTGACATCCCTTTTTCCTCTGTTACACAGCATGATAGGCAATATCAAGAATCTCCCTTCATTTCTCAGACATTAGGTGACAACGTGTCTTCCGAAATACATTCAACAACATTCGTTTCTCACCCTCAAGAAAATGATGATATTTCCTGGGGACCAGATCCATTTCAGGATATTCTTAGTTTTCCTGAAAATGTTTCTGTCCAGCATGATCAGGTGGAAAACAGTGCCTGTTTCATGAATGATGACAATGTAAAAAAATCGGATTTTGGAGAGTGGGTTGATCAGTTAATGTCTATTGATGATTCTCTTCACCCAAATTGGAATCAGCTTCTTGGTGAGGACAATGTATCAGAATCAAAACCAAAGGCAACACAGGTTTCCCAGCAGCAGCAAATACCATCTGGAGAAGGCAGTGGTCTTTGTAATTCATCATCAACTGCACCGCAAACTAAGCCTAGAATGCGTTGGACGCCAGAACTTCATGAGGCCTTTGTGGAAGCAGTCAATCAGCTTGGTGGTAGTGAAAAGGCTACTCCAAAGGGTGTCTTGAATCTGATGAAAGTTGAAGGCCTTACCATCTATCATGTAAAAAGTCACCTACAGAAGTATAGAACTGCCAGATACAAACCTGAGTCATCAGAAGATGCAGGAACTTCTGAAAAAAAGATGAGTTCCATTGAAGAAATGAAATCTCTGGACTTGAAAACGAGTAAGGGGATCACTGAAGCATTACGGTTGCAGATGGAACTCCAGAAACGGCTTCATGAACAACTTGAGATTCAAAGGAAGTTGCAGATTCAAATTGAAGACCAAGGGAAACGTCTTCAGGTGATGTTTGAGAAACAGAGAGAGATGGGAGACAGCAAGGTCAAGGGCTCGTCCTCCTCTATGGACGCGCCTTCTACCGCACCATCAGACACAGTGCTACCTTCTTCACCAGTAGACAAATTAGAAACCTCAAATGAGGAACATGACAAATTAGGAAGCAACAGTAGCATTCCAAAAGCCATGCCTGAAGAAAGTTCCCAGGATGCAAGCACAAAGCAAATGGTAGGTGAAGCTGAAGTAATCAATGAACAGGAGACCATAGATGATCAGTTTGCTGCACCACCCACAAAACGGATGAAGAGTTGA 1314 0.43 MSSSLPVLPTPLENKYMKPPDSFQLSPIRDLTANPASLQATSSNSIRSVGQVFSSPAEYPGDIPFSSVTQHDRQYQESPFISQTLGDNVSSEIHSTTFVSHPQENDDISWGPDPFQDILSFPENVSVQHDQVENSACFMNDDNVKKSDFGEWVDQLMSIDDSLHPNWNQLLGEDNVSESKPKATQVSQQQQIPSGEGSGLCNSSSTAPQTKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPESSEDAGTSEKKMSSIEEMKSLDLKTSKGITEALRLQMELQKRLHEQLEIQRKLQIQIEDQGKRLQVMFEKQREMGDSKVKGSSSSMDAPSTAPSDTVLPSSPVDKLETSNEEHDKLGSNSSIPKAMPEESSQDASTKQMVGEAEVINEQETIDDQFAAPPTKRMKS 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi172g00109 437 SUPERFAMILY Homeodomain-like 209 265 IPR009057 -
Sebi172g00109 437 Pfam Myb-like DNA-binding domain 213 264 IPR001005 -
Sebi172g00109 437 MobiDBLite consensus disorder prediction 394 409 - -
Sebi172g00109 437 FunFam Myb family transcription factor 210 268 - -
Sebi172g00109 437 MobiDBLite consensus disorder prediction 349 376 - -
Sebi172g00109 437 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 179 410 IPR044848 GO:0003700
Sebi172g00109 437 MobiDBLite consensus disorder prediction 172 212 - -
Sebi172g00109 437 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 268 IPR017930 -
Sebi172g00109 437 MobiDBLite consensus disorder prediction 172 213 - -
Sebi172g00109 437 Pfam MYB-CC type transfactor, LHEQLE motif 300 344 IPR025756 -
Sebi172g00109 437 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 265 IPR006447 GO:0003677
Sebi172g00109 437 MobiDBLite consensus disorder prediction 265 287 - -
Sebi172g00109 437 Coils Coil 301 321 - -
Sebi172g00109 437 MobiDBLite consensus disorder prediction 1 30 - -
Sebi172g00109 437 MobiDBLite consensus disorder prediction 342 437 - -
Sebi172g00109 437 Gene3D - 210 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi172g00109 Sebi-Chr172 1188656 1191660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi172g00109 92 365 G2-like Transcription Factor Family AT3G04450 50.000 8.65e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Sebi172g00109 Myb_DNA-binding 1.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi172g00109 - - mtr:25499705 631.328